miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1369 3' -55.8 NC_001335.1 + 48382 0.66 0.668191
Target:  5'- -cUGGCccACGCCAAGggugugguucgGCCGgCCGGcCg -3'
miRNA:   3'- caACCGu-UGCGGUUC-----------UGGCaGGCCaG- -5'
1369 3' -55.8 NC_001335.1 + 42428 0.66 0.668191
Target:  5'- cUUGG--ACGCCGAGACgcacgcggcuCGcgCCGGUCg -3'
miRNA:   3'- cAACCguUGCGGUUCUG----------GCa-GGCCAG- -5'
1369 3' -55.8 NC_001335.1 + 26709 0.66 0.657173
Target:  5'- -gUGuCAGCaCCAAGACCGUCCGc-- -3'
miRNA:   3'- caACcGUUGcGGUUCUGGCAGGCcag -5'
1369 3' -55.8 NC_001335.1 + 37965 0.66 0.635077
Target:  5'- --cGGCGacgACGCCGguauGGAguUCGcCCGGUCg -3'
miRNA:   3'- caaCCGU---UGCGGU----UCU--GGCaGGCCAG- -5'
1369 3' -55.8 NC_001335.1 + 49536 0.66 0.635076
Target:  5'- cUUGGUAA--CCAAGACCaaagGUCuCGGUCa -3'
miRNA:   3'- cAACCGUUgcGGUUCUGG----CAG-GCCAG- -5'
1369 3' -55.8 NC_001335.1 + 51824 0.67 0.624019
Target:  5'- --cGGCAcggGCuGCCGGGACUGUCCa--- -3'
miRNA:   3'- caaCCGU---UG-CGGUUCUGGCAGGccag -5'
1369 3' -55.8 NC_001335.1 + 4603 0.67 0.622914
Target:  5'- aGUUGGCucccCGCCAAGGacucgaaccucaaUUGcCCGGUCc -3'
miRNA:   3'- -CAACCGuu--GCGGUUCU-------------GGCaGGCCAG- -5'
1369 3' -55.8 NC_001335.1 + 26672 0.67 0.612969
Target:  5'- --cGGCcg-GCuCAAGGCCGUUCGGcUCg -3'
miRNA:   3'- caaCCGuugCG-GUUCUGGCAGGCC-AG- -5'
1369 3' -55.8 NC_001335.1 + 4248 0.67 0.612969
Target:  5'- --aGGgGACgGCCcgAAGGCCGUCUGGcCc -3'
miRNA:   3'- caaCCgUUG-CGG--UUCUGGCAGGCCaG- -5'
1369 3' -55.8 NC_001335.1 + 16372 0.67 0.598631
Target:  5'- --gGGCAGCGUCGAGgcggcugccuugauGCCGUCCa--- -3'
miRNA:   3'- caaCCGUUGCGGUUC--------------UGGCAGGccag -5'
1369 3' -55.8 NC_001335.1 + 5970 0.67 0.590928
Target:  5'- --cGGCAGCGgCGuucccgauuGGCCGU-CGGUCg -3'
miRNA:   3'- caaCCGUUGCgGUu--------CUGGCAgGCCAG- -5'
1369 3' -55.8 NC_001335.1 + 29341 0.67 0.579956
Target:  5'- --cGGCAGCGUCugcGCCGggaugCCGGUg -3'
miRNA:   3'- caaCCGUUGCGGuucUGGCa----GGCCAg -5'
1369 3' -55.8 NC_001335.1 + 8600 0.68 0.558151
Target:  5'- --cGGUGACGCCGAuGGCC-UCUGGcCg -3'
miRNA:   3'- caaCCGUUGCGGUU-CUGGcAGGCCaG- -5'
1369 3' -55.8 NC_001335.1 + 39787 0.68 0.558151
Target:  5'- -gUGGcCAACGCUucccAGACCGUggugCGGUCc -3'
miRNA:   3'- caACC-GUUGCGGu---UCUGGCAg---GCCAG- -5'
1369 3' -55.8 NC_001335.1 + 24415 0.68 0.525909
Target:  5'- --gGuGCGACGaCCAAGGagcugauggcCCGUCuCGGUCa -3'
miRNA:   3'- caaC-CGUUGC-GGUUCU----------GGCAG-GCCAG- -5'
1369 3' -55.8 NC_001335.1 + 11895 0.69 0.473869
Target:  5'- cGUUGGa---GCCGGuGCCGUCCGGg- -3'
miRNA:   3'- -CAACCguugCGGUUcUGGCAGGCCag -5'
1369 3' -55.8 NC_001335.1 + 41682 0.69 0.463768
Target:  5'- -gUGGggauCGACGCCuGGGGCCGgCUGGUCu -3'
miRNA:   3'- caACC----GUUGCGG-UUCUGGCaGGCCAG- -5'
1369 3' -55.8 NC_001335.1 + 16651 0.69 0.453781
Target:  5'- cGUUGGaCAGCGUCAGGAacgccugCGUgCCGGUa -3'
miRNA:   3'- -CAACC-GUUGCGGUUCUg------GCA-GGCCAg -5'
1369 3' -55.8 NC_001335.1 + 15895 0.69 0.453781
Target:  5'- --gGGCGAUGUCGAGAUCaa-CGGUCa -3'
miRNA:   3'- caaCCGUUGCGGUUCUGGcagGCCAG- -5'
1369 3' -55.8 NC_001335.1 + 38350 0.69 0.453781
Target:  5'- -cUGGCcg-GCCGAGcggaacuaaGCCGUUCGGUCu -3'
miRNA:   3'- caACCGuugCGGUUC---------UGGCAGGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.