miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1370 5' -61.5 NC_001335.1 + 8605 0.66 0.390758
Target:  5'- cGGGAcGGUgACgCCGAUgGCCUcugGCCGGCg -3'
miRNA:   3'- aUCCU-UCG-UG-GGCUGaCGGG---CGGCCG- -5'
1370 5' -61.5 NC_001335.1 + 6022 0.66 0.390758
Target:  5'- cGGGuAGUugCCGauggGCUGCCa-CCGGUa -3'
miRNA:   3'- aUCCuUCGugGGC----UGACGGgcGGCCG- -5'
1370 5' -61.5 NC_001335.1 + 2366 0.66 0.382054
Target:  5'- cGGcGAAGUucaGCCuCGACcucgcugGCCCGCUGGg -3'
miRNA:   3'- aUC-CUUCG---UGG-GCUGa------CGGGCGGCCg -5'
1370 5' -61.5 NC_001335.1 + 39607 0.66 0.376894
Target:  5'- cAGucGGCACCCGGCacugcaugcgagagGCCgaaaggGCCGGCa -3'
miRNA:   3'- aUCcuUCGUGGGCUGa-------------CGGg-----CGGCCG- -5'
1370 5' -61.5 NC_001335.1 + 7593 0.66 0.37348
Target:  5'- cGGGggGaucucggagACCgGGgUGUCgGCCGGCg -3'
miRNA:   3'- aUCCuuCg--------UGGgCUgACGGgCGGCCG- -5'
1370 5' -61.5 NC_001335.1 + 32009 0.66 0.37263
Target:  5'- -uGGAuccgaccgaccuuGGCAUCCauCUGCCC-CCGGCu -3'
miRNA:   3'- auCCU-------------UCGUGGGcuGACGGGcGGCCG- -5'
1370 5' -61.5 NC_001335.1 + 26086 0.66 0.356727
Target:  5'- -uGGggGUAggCGugUGCCacguuGCCGGCc -3'
miRNA:   3'- auCCuuCGUggGCugACGGg----CGGCCG- -5'
1370 5' -61.5 NC_001335.1 + 32424 0.66 0.356727
Target:  5'- aGGGGAGCuguagaaggGCUUcGCUGCCCcCUGGCu -3'
miRNA:   3'- aUCCUUCG---------UGGGcUGACGGGcGGCCG- -5'
1370 5' -61.5 NC_001335.1 + 32984 0.66 0.347741
Target:  5'- -cGuGGAGCACCgCccCUGCCCagcccgaGCCGGCc -3'
miRNA:   3'- auC-CUUCGUGG-GcuGACGGG-------CGGCCG- -5'
1370 5' -61.5 NC_001335.1 + 33805 0.67 0.332603
Target:  5'- --cGAGGUAgUCGGucUUGCCgGCCGGCg -3'
miRNA:   3'- aucCUUCGUgGGCU--GACGGgCGGCCG- -5'
1370 5' -61.5 NC_001335.1 + 3040 0.67 0.324833
Target:  5'- ---cGAGCACCCG-CUGaCCCGacaGGCg -3'
miRNA:   3'- auccUUCGUGGGCuGAC-GGGCgg-CCG- -5'
1370 5' -61.5 NC_001335.1 + 46395 0.67 0.309699
Target:  5'- -cGGuaGAGCACCaacGCUccCCCGCCGGCc -3'
miRNA:   3'- auCC--UUCGUGGgc-UGAc-GGGCGGCCG- -5'
1370 5' -61.5 NC_001335.1 + 12720 0.67 0.301607
Target:  5'- gGGGAuccGGCGCuuGAucaugcgcucgauCUGCUggaGCCGGCg -3'
miRNA:   3'- aUCCU---UCGUGggCU-------------GACGGg--CGGCCG- -5'
1370 5' -61.5 NC_001335.1 + 5970 0.67 0.295108
Target:  5'- -cGGcAGCGgcguuCCCGAUUGgCCGUCGGUc -3'
miRNA:   3'- auCCuUCGU-----GGGCUGACgGGCGGCCG- -5'
1370 5' -61.5 NC_001335.1 + 31407 0.68 0.288016
Target:  5'- gAGGAagaAGCACCUGAaaGCUgCGCUGGg -3'
miRNA:   3'- aUCCU---UCGUGGGCUgaCGG-GCGGCCg -5'
1370 5' -61.5 NC_001335.1 + 4176 0.68 0.28037
Target:  5'- -cGGccGAGCugCuuugcaucgccgcCGGCUGCCuCGCCGGUc -3'
miRNA:   3'- auCC--UUCGugG-------------GCUGACGG-GCGGCCG- -5'
1370 5' -61.5 NC_001335.1 + 26237 0.68 0.260338
Target:  5'- gUAGGAGGCAcaaaaaaauacccCCCGAgcCaGCCCGaaGGCc -3'
miRNA:   3'- -AUCCUUCGU-------------GGGCU--GaCGGGCggCCG- -5'
1370 5' -61.5 NC_001335.1 + 30746 0.68 0.254561
Target:  5'- gGGGAGGCauuGCCUGACggcaagGCCCcuaCCGGg -3'
miRNA:   3'- aUCCUUCG---UGGGCUGa-----CGGGc--GGCCg -5'
1370 5' -61.5 NC_001335.1 + 44407 0.69 0.224363
Target:  5'- gGGGAcGUACCUGAaccCgCCGCCGGCc -3'
miRNA:   3'- aUCCUuCGUGGGCUgacG-GGCGGCCG- -5'
1370 5' -61.5 NC_001335.1 + 46598 0.7 0.207743
Target:  5'- cGGGGAGUACaagCCGAagaGCaCCGCUGGCc -3'
miRNA:   3'- aUCCUUCGUG---GGCUga-CG-GGCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.