Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1377 | 5' | -52.6 | NC_001335.1 | + | 49393 | 0.68 | 0.718147 |
Target: 5'- --------cGGCGGCGAgGUUUGCCGCu -3' miRNA: 3'- cagcuucuaCCGUUGCU-CGAACGGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 47799 | 0.68 | 0.706018 |
Target: 5'- gGUCGAAGAgUGGUGACGAcaGCUUGacaucuaCCGa -3' miRNA: 3'- -CAGCUUCU-ACCGUUGCU--CGAAC-------GGCg -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 45506 | 0.72 | 0.485099 |
Target: 5'- aGUgGAAGAcgUGGCAugACGAGCccgcGCCGUu -3' miRNA: 3'- -CAgCUUCU--ACCGU--UGCUCGaa--CGGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 45329 | 0.67 | 0.750624 |
Target: 5'- cUCGAGGAguacaucaaGGCuACGGGUUcgucggGCCGCu -3' miRNA: 3'- cAGCUUCUa--------CCGuUGCUCGAa-----CGGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 42722 | 0.7 | 0.594585 |
Target: 5'- gGUCGGAGAUGG-AACGGGCaggaguucgUGaCGCg -3' miRNA: 3'- -CAGCUUCUACCgUUGCUCGa--------ACgGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 42260 | 0.7 | 0.594585 |
Target: 5'- gGUCGAGGAUuGCGACGAuCUgGUCGUa -3' miRNA: 3'- -CAGCUUCUAcCGUUGCUcGAaCGGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 41370 | 0.66 | 0.799072 |
Target: 5'- uUCGGuguccauccucagcGGAUGGUcgcucgAACGAGCUacgcgggcUGUCGCg -3' miRNA: 3'- cAGCU--------------UCUACCG------UUGCUCGA--------ACGGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 39617 | 0.69 | 0.639785 |
Target: 5'- --gGAGGAUGcCAGCccGCUUGCCGUa -3' miRNA: 3'- cagCUUCUACcGUUGcuCGAACGGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 38755 | 0.71 | 0.517101 |
Target: 5'- -gCGGAGAccGGCGA-GGGCUUcGCCGCc -3' miRNA: 3'- caGCUUCUa-CCGUUgCUCGAA-CGGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 38657 | 0.66 | 0.830731 |
Target: 5'- uUCGAAGAUcccguucaggacGGCGGCGaAGCccucGCCGg -3' miRNA: 3'- cAGCUUCUA------------CCGUUGC-UCGaa--CGGCg -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 32566 | 0.66 | 0.830731 |
Target: 5'- cUCGAAGAa---GACGGGCaaGCCGUa -3' miRNA: 3'- cAGCUUCUaccgUUGCUCGaaCGGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 32271 | 0.66 | 0.820426 |
Target: 5'- aUCGAucucGGUGGCAGCGAucaGUUUGgcuuucauacucuCCGCu -3' miRNA: 3'- cAGCUu---CUACCGUUGCU---CGAAC-------------GGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 32267 | 0.66 | 0.821374 |
Target: 5'- -aCGAAGAUcccuacuucGGCGacuucgaugccgACGAGCUgGCCGa -3' miRNA: 3'- caGCUUCUA---------CCGU------------UGCUCGAaCGGCg -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 31884 | 0.69 | 0.68486 |
Target: 5'- aUCGucaaccGGcUGGCuGACcgGGGCUUGCCGCg -3' miRNA: 3'- cAGCu-----UCuACCG-UUG--CUCGAACGGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 29581 | 1.11 | 0.001211 |
Target: 5'- gGUCGAAGAUGGCAACGAGCUUGCCGCc -3' miRNA: 3'- -CAGCUUCUACCGUUGCUCGAACGGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 29061 | 0.73 | 0.454072 |
Target: 5'- --aGAAGcUGGCGAUGgaAGCUgGCCGCa -3' miRNA: 3'- cagCUUCuACCGUUGC--UCGAaCGGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 28505 | 0.68 | 0.729079 |
Target: 5'- aUCGGAGGUGGag-UGAGCaUUGCCu- -3' miRNA: 3'- cAGCUUCUACCguuGCUCG-AACGGcg -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 26544 | 0.68 | 0.739909 |
Target: 5'- aUCGAccucaGUGGUAcGCGGGCUcGCCGUa -3' miRNA: 3'- cAGCUuc---UACCGU-UGCUCGAaCGGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 25987 | 0.76 | 0.301483 |
Target: 5'- -gCGAccGUGGCGACGAGCgucagGCCGUc -3' miRNA: 3'- caGCUucUACCGUUGCUCGaa---CGGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 25608 | 0.68 | 0.707125 |
Target: 5'- -gCGGAGcgGGCGACGGGaaucgaacCCGCg -3' miRNA: 3'- caGCUUCuaCCGUUGCUCgaac----GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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