miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1378 5' -54.8 NC_001335.1 + 22177 0.66 0.7593
Target:  5'- aGCgCCGgugaccgugucGAAUG-CUCCUUCGACCcagUCCg -3'
miRNA:   3'- -CGaGGU-----------CUUGCgGAGGAAGCUGG---AGG- -5'
1378 5' -54.8 NC_001335.1 + 1248 0.66 0.7593
Target:  5'- aGCUCCAccccCGCCUCCgaCG-CCgCCu -3'
miRNA:   3'- -CGAGGUcuu-GCGGAGGaaGCuGGaGG- -5'
1378 5' -54.8 NC_001335.1 + 19141 0.66 0.7593
Target:  5'- ---gCAGAuCGCUUCCgagUCGGgCUCCc -3'
miRNA:   3'- cgagGUCUuGCGGAGGa--AGCUgGAGG- -5'
1378 5' -54.8 NC_001335.1 + 34532 0.66 0.748999
Target:  5'- uGCUCCgacAGAAUGCCuacaUCCUUCaucGCCUg- -3'
miRNA:   3'- -CGAGG---UCUUGCGG----AGGAAGc--UGGAgg -5'
1378 5' -54.8 NC_001335.1 + 30175 0.66 0.748999
Target:  5'- cGCUUgAGAGCGCCgauggcgaUCCgcaCGuCCUCg -3'
miRNA:   3'- -CGAGgUCUUGCGG--------AGGaa-GCuGGAGg -5'
1378 5' -54.8 NC_001335.1 + 24473 0.66 0.748999
Target:  5'- --gCCGGAACuCCgcaUCCa-CGACCUCCg -3'
miRNA:   3'- cgaGGUCUUGcGG---AGGaaGCUGGAGG- -5'
1378 5' -54.8 NC_001335.1 + 12762 0.66 0.748999
Target:  5'- gGC-CCGGAACGUCgCCgacgcagCGGCUUUCa -3'
miRNA:   3'- -CGaGGUCUUGCGGaGGaa-----GCUGGAGG- -5'
1378 5' -54.8 NC_001335.1 + 50926 0.66 0.728052
Target:  5'- uGC-CCGGuGACGCCcggCCUgUCGGCCUg- -3'
miRNA:   3'- -CGaGGUC-UUGCGGa--GGA-AGCUGGAgg -5'
1378 5' -54.8 NC_001335.1 + 45833 0.66 0.71743
Target:  5'- aCUCCAucACaCCUCCUguUUGACCUUg -3'
miRNA:   3'- cGAGGUcuUGcGGAGGA--AGCUGGAGg -5'
1378 5' -54.8 NC_001335.1 + 650 0.67 0.706723
Target:  5'- -gUCCcccGAGCGCCUUCU-CGACCg-- -3'
miRNA:   3'- cgAGGu--CUUGCGGAGGAaGCUGGagg -5'
1378 5' -54.8 NC_001335.1 + 18021 0.67 0.706723
Target:  5'- gGUUCUgcAGCGCCUC--UCGGCCUgCCu -3'
miRNA:   3'- -CGAGGucUUGCGGAGgaAGCUGGA-GG- -5'
1378 5' -54.8 NC_001335.1 + 3538 0.67 0.695944
Target:  5'- uGCgUCCAGAGCGUCUUggaugUCG-CCUgCCa -3'
miRNA:   3'- -CG-AGGUCUUGCGGAGga---AGCuGGA-GG- -5'
1378 5' -54.8 NC_001335.1 + 19846 0.67 0.674213
Target:  5'- aGCUUguGGACGCUgCCUgaUGACC-CCa -3'
miRNA:   3'- -CGAGguCUUGCGGaGGAa-GCUGGaGG- -5'
1378 5' -54.8 NC_001335.1 + 48879 0.67 0.663282
Target:  5'- cGCgUCCGGucgcCGCgUCCUgcUCGACCaCCu -3'
miRNA:   3'- -CG-AGGUCuu--GCGgAGGA--AGCUGGaGG- -5'
1378 5' -54.8 NC_001335.1 + 18925 0.67 0.663282
Target:  5'- -aUCCGcAGCGUCUCCUUgGGcaguuCCUCCc -3'
miRNA:   3'- cgAGGUcUUGCGGAGGAAgCU-----GGAGG- -5'
1378 5' -54.8 NC_001335.1 + 31013 0.68 0.652322
Target:  5'- cGC-CCAGGuACGCCuggcggaugUCCUU-GACCUCg -3'
miRNA:   3'- -CGaGGUCU-UGCGG---------AGGAAgCUGGAGg -5'
1378 5' -54.8 NC_001335.1 + 804 0.68 0.641344
Target:  5'- cGUUCCAuagcuGCGCCgCCUUCGGCauguucgUCCa -3'
miRNA:   3'- -CGAGGUcu---UGCGGaGGAAGCUGg------AGG- -5'
1378 5' -54.8 NC_001335.1 + 11046 0.68 0.619372
Target:  5'- cGCUCagcGAGCuugGCCUCgUacUCGGCCUUCa -3'
miRNA:   3'- -CGAGgu-CUUG---CGGAGgA--AGCUGGAGG- -5'
1378 5' -54.8 NC_001335.1 + 29240 0.69 0.575635
Target:  5'- aGCgccgCCAGGACGCgaagCUCCUgcgccugguagUCGACUgaggCCa -3'
miRNA:   3'- -CGa---GGUCUUGCG----GAGGA-----------AGCUGGa---GG- -5'
1378 5' -54.8 NC_001335.1 + 10908 0.69 0.564795
Target:  5'- gGUUCCAu--CGgCUUC-UCGACCUCCg -3'
miRNA:   3'- -CGAGGUcuuGCgGAGGaAGCUGGAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.