miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1383 5' -56 NC_001335.1 + 37617 0.66 0.701682
Target:  5'- cCGUgaCAUCGACugcgucgaaguCGAuCCCGGCAGCc -3'
miRNA:   3'- aGCAagGUGGCUG-----------GCUuGGGCCGUUG- -5'
1383 5' -56 NC_001335.1 + 50016 0.66 0.695245
Target:  5'- uUCGgagcCUugCGACggucgcaauccuugaCGAACUCGGCGACc -3'
miRNA:   3'- -AGCaa--GGugGCUG---------------GCUUGGGCCGUUG- -5'
1383 5' -56 NC_001335.1 + 2107 0.66 0.690942
Target:  5'- uUCG-UCCAgUuuaucggugaaGAUCGGGCUCGGCGGCu -3'
miRNA:   3'- -AGCaAGGUgG-----------CUGGCUUGGGCCGUUG- -5'
1383 5' -56 NC_001335.1 + 46415 0.66 0.690942
Target:  5'- ----cCCGCCGGCCGAuuCCaCGGCc-- -3'
miRNA:   3'- agcaaGGUGGCUGGCUu-GG-GCCGuug -5'
1383 5' -56 NC_001335.1 + 25982 0.66 0.690942
Target:  5'- aUCcugUCCACCGucguAUCGGuggCCGGCAACg -3'
miRNA:   3'- -AGca-AGGUGGC----UGGCUug-GGCCGUUG- -5'
1383 5' -56 NC_001335.1 + 39415 0.66 0.680145
Target:  5'- aUCGUcCuCACCGAagucgaacUCGAugCUGGCGAUc -3'
miRNA:   3'- -AGCAaG-GUGGCU--------GGCUugGGCCGUUG- -5'
1383 5' -56 NC_001335.1 + 3305 0.66 0.680145
Target:  5'- cUGUUCC-UCGAacUCGAGaCCGGCGGCg -3'
miRNA:   3'- aGCAAGGuGGCU--GGCUUgGGCCGUUG- -5'
1383 5' -56 NC_001335.1 + 16579 0.66 0.676897
Target:  5'- gCGUUCCugacgcuguccaacGCCGGCgCGAACUcguuCGGCAc- -3'
miRNA:   3'- aGCAAGG--------------UGGCUG-GCUUGG----GCCGUug -5'
1383 5' -56 NC_001335.1 + 48290 0.66 0.668218
Target:  5'- gUCGcggCCgGCCGGCCGAACCacacccuUGGCGu- -3'
miRNA:   3'- -AGCaa-GG-UGGCUGGCUUGG-------GCCGUug -5'
1383 5' -56 NC_001335.1 + 36841 0.66 0.647528
Target:  5'- cUUGgUCCACCGAgaCGGGCUCGGguAg -3'
miRNA:   3'- -AGCaAGGUGGCUg-GCUUGGGCCguUg -5'
1383 5' -56 NC_001335.1 + 23916 0.66 0.647528
Target:  5'- gCGccUCCAgcuCCGA-CGAGCCCGGUGAUc -3'
miRNA:   3'- aGCa-AGGU---GGCUgGCUUGGGCCGUUG- -5'
1383 5' -56 NC_001335.1 + 1789 0.67 0.636615
Target:  5'- cUUGgugCCGCCGuacauGCCGAGgCCGGCu-- -3'
miRNA:   3'- -AGCaa-GGUGGC-----UGGCUUgGGCCGuug -5'
1383 5' -56 NC_001335.1 + 51724 0.67 0.635523
Target:  5'- aCGUgccgcuaUCCGCUGgucacGCUGGAcaguCCCGGCAGCc -3'
miRNA:   3'- aGCA-------AGGUGGC-----UGGCUU----GGGCCGUUG- -5'
1383 5' -56 NC_001335.1 + 50838 0.67 0.614785
Target:  5'- gCGUUCaGCCaGGCCGAcagGCCgGGCGu- -3'
miRNA:   3'- aGCAAGgUGG-CUGGCU---UGGgCCGUug -5'
1383 5' -56 NC_001335.1 + 49103 0.67 0.608245
Target:  5'- -aGUUCCACgaggaccgcauCGACCGGcucgucacaacgcugGCCgaCGGCAACg -3'
miRNA:   3'- agCAAGGUG-----------GCUGGCU---------------UGG--GCCGUUG- -5'
1383 5' -56 NC_001335.1 + 40133 0.68 0.560623
Target:  5'- -aGgagUUCACCGGCCucGCCC-GCAACg -3'
miRNA:   3'- agCa--AGGUGGCUGGcuUGGGcCGUUG- -5'
1383 5' -56 NC_001335.1 + 1663 0.68 0.549929
Target:  5'- -gGUUCCcCCGAUCu-ACUCGGCAAUc -3'
miRNA:   3'- agCAAGGuGGCUGGcuUGGGCCGUUG- -5'
1383 5' -56 NC_001335.1 + 7134 0.68 0.549929
Target:  5'- aCGgugaUCCACgCGGCUGAACgCGGCuuGCc -3'
miRNA:   3'- aGCa---AGGUG-GCUGGCUUGgGCCGu-UG- -5'
1383 5' -56 NC_001335.1 + 1523 0.68 0.539298
Target:  5'- aUCG-UCCACCGcACCaAGCacuuCGGCGACc -3'
miRNA:   3'- -AGCaAGGUGGC-UGGcUUGg---GCCGUUG- -5'
1383 5' -56 NC_001335.1 + 49639 0.68 0.539298
Target:  5'- aCGUUCCugCGGCCGuugacgcacaGACC--GCAACg -3'
miRNA:   3'- aGCAAGGugGCUGGC----------UUGGgcCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.