miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1386 5' -55.1 NC_001335.1 + 2022 0.66 0.720595
Target:  5'- aUCugCGCCucGAUGaagCCGUCCAGGgugcCGUa -3'
miRNA:   3'- aAGugGCGG--UUGCa--GGUAGGUCU----GCG- -5'
1386 5' -55.1 NC_001335.1 + 19524 0.66 0.720595
Target:  5'- -cCGCuCGCCAGCGaCCAggccgCgCAGGCGg -3'
miRNA:   3'- aaGUG-GCGGUUGCaGGUa----G-GUCUGCg -5'
1386 5' -55.1 NC_001335.1 + 35624 0.66 0.720595
Target:  5'- gUCAUCGUCAAgGaUgGUCCGGGCaGCa -3'
miRNA:   3'- aAGUGGCGGUUgCaGgUAGGUCUG-CG- -5'
1386 5' -55.1 NC_001335.1 + 21966 0.66 0.720595
Target:  5'- -gCGCCGUCAGCG-CCGauggccUCUAGugGg -3'
miRNA:   3'- aaGUGGCGGUUGCaGGU------AGGUCugCg -5'
1386 5' -55.1 NC_001335.1 + 44224 0.66 0.698907
Target:  5'- gUCAUCGCCGA---UCAUCCAGgguggcuguucGCGCa -3'
miRNA:   3'- aAGUGGCGGUUgcaGGUAGGUC-----------UGCG- -5'
1386 5' -55.1 NC_001335.1 + 41833 0.66 0.681361
Target:  5'- --uGCCGUCGACacaugcucgaacaCCAUCCAGuACGCa -3'
miRNA:   3'- aagUGGCGGUUGca-----------GGUAGGUC-UGCG- -5'
1386 5' -55.1 NC_001335.1 + 18828 0.66 0.676954
Target:  5'- -aCGCCGCCGugG-CCGUgggaggaacugcCCaaggAGACGCu -3'
miRNA:   3'- aaGUGGCGGUugCaGGUA------------GG----UCUGCG- -5'
1386 5' -55.1 NC_001335.1 + 16236 0.66 0.676954
Target:  5'- gUCGCUGCUgucuGCGUUCGgagCCGG-CGCu -3'
miRNA:   3'- aAGUGGCGGu---UGCAGGUa--GGUCuGCG- -5'
1386 5' -55.1 NC_001335.1 + 9034 0.66 0.676954
Target:  5'- cUCACCGUCAGCGcggaaCCAgccgauggucUCCAucGGCGUg -3'
miRNA:   3'- aAGUGGCGGUUGCa----GGU----------AGGU--CUGCG- -5'
1386 5' -55.1 NC_001335.1 + 8741 0.66 0.675851
Target:  5'- gUUCACgGCCGGuCGUUCAUcacgaucagcaagCCAGAccCGCa -3'
miRNA:   3'- -AAGUGgCGGUU-GCAGGUA-------------GGUCU--GCG- -5'
1386 5' -55.1 NC_001335.1 + 7075 0.67 0.654827
Target:  5'- aUCACCGUC-GCGgccgucagCCAggaCCAGACGa -3'
miRNA:   3'- aAGUGGCGGuUGCa-------GGUa--GGUCUGCg -5'
1386 5' -55.1 NC_001335.1 + 44406 0.67 0.641505
Target:  5'- cUCACCGCCGAgGgugaacUCCucuggucguggCCAGACGa -3'
miRNA:   3'- aAGUGGCGGUUgC------AGGua---------GGUCUGCg -5'
1386 5' -55.1 NC_001335.1 + 32612 0.67 0.632615
Target:  5'- -cCACCGCCGcCG-CCGUuggCCGG-CGCg -3'
miRNA:   3'- aaGUGGCGGUuGCaGGUA---GGUCuGCG- -5'
1386 5' -55.1 NC_001335.1 + 23232 0.67 0.632615
Target:  5'- aUCACCGaCAACGaUCCuaCCGG-CGCa -3'
miRNA:   3'- aAGUGGCgGUUGC-AGGuaGGUCuGCG- -5'
1386 5' -55.1 NC_001335.1 + 22739 0.67 0.631504
Target:  5'- -aCACCG-CGACGUUCGUCCgcaccaaccccgcAGACGa -3'
miRNA:   3'- aaGUGGCgGUUGCAGGUAGG-------------UCUGCg -5'
1386 5' -55.1 NC_001335.1 + 49569 0.67 0.621503
Target:  5'- --aGCCGuCCAGCGcggCCAUCCAGGucucgaaGCu -3'
miRNA:   3'- aagUGGC-GGUUGCa--GGUAGGUCUg------CG- -5'
1386 5' -55.1 NC_001335.1 + 4159 0.67 0.610401
Target:  5'- aUCGCCGCCGGCuGcCUcgCCGGuCGg -3'
miRNA:   3'- aAGUGGCGGUUG-CaGGuaGGUCuGCg -5'
1386 5' -55.1 NC_001335.1 + 9173 0.67 0.609291
Target:  5'- -gCGCCGCC-GCGUCgGUCaucgaccgaagcuCGGGCGUg -3'
miRNA:   3'- aaGUGGCGGuUGCAGgUAG-------------GUCUGCG- -5'
1386 5' -55.1 NC_001335.1 + 262 0.68 0.603748
Target:  5'- -gCGCCGCacaGGCGgcgcgauaagagcgCCA-CCAGGCGCu -3'
miRNA:   3'- aaGUGGCGg--UUGCa-------------GGUaGGUCUGCG- -5'
1386 5' -55.1 NC_001335.1 + 2715 0.68 0.599317
Target:  5'- -aCACC-CCGGacaGUCCAaccgacacgaUCCAGAUGCc -3'
miRNA:   3'- aaGUGGcGGUUg--CAGGU----------AGGUCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.