Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1386 | 5' | -55.1 | NC_001335.1 | + | 49569 | 0.67 | 0.621503 |
Target: 5'- --aGCCGuCCAGCGcggCCAUCCAGGucucgaaGCu -3' miRNA: 3'- aagUGGC-GGUUGCa--GGUAGGUCUg------CG- -5' |
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1386 | 5' | -55.1 | NC_001335.1 | + | 49333 | 0.68 | 0.577246 |
Target: 5'- cUCGCCGCCGcaGCGUUggcaGUCCc-ACGCg -3' miRNA: 3'- aAGUGGCGGU--UGCAGg---UAGGucUGCG- -5' |
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1386 | 5' | -55.1 | NC_001335.1 | + | 46878 | 0.72 | 0.349337 |
Target: 5'- -cCACCGaccugcCCGACG-CCAUCCAGugGg -3' miRNA: 3'- aaGUGGC------GGUUGCaGGUAGGUCugCg -5' |
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1386 | 5' | -55.1 | NC_001335.1 | + | 44406 | 0.67 | 0.641505 |
Target: 5'- cUCACCGCCGAgGgugaacUCCucuggucguggCCAGACGa -3' miRNA: 3'- aAGUGGCGGUUgC------AGGua---------GGUCUGCg -5' |
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1386 | 5' | -55.1 | NC_001335.1 | + | 44224 | 0.66 | 0.698907 |
Target: 5'- gUCAUCGCCGA---UCAUCCAGgguggcuguucGCGCa -3' miRNA: 3'- aAGUGGCGGUUgcaGGUAGGUC-----------UGCG- -5' |
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1386 | 5' | -55.1 | NC_001335.1 | + | 41833 | 0.66 | 0.681361 |
Target: 5'- --uGCCGUCGACacaugcucgaacaCCAUCCAGuACGCa -3' miRNA: 3'- aagUGGCGGUUGca-----------GGUAGGUC-UGCG- -5' |
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1386 | 5' | -55.1 | NC_001335.1 | + | 35624 | 0.66 | 0.720595 |
Target: 5'- gUCAUCGUCAAgGaUgGUCCGGGCaGCa -3' miRNA: 3'- aAGUGGCGGUUgCaGgUAGGUCUG-CG- -5' |
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1386 | 5' | -55.1 | NC_001335.1 | + | 33237 | 1.08 | 0.001021 |
Target: 5'- gUUCACCGCCAACGUCCAUCCAGACGCc -3' miRNA: 3'- -AAGUGGCGGUUGCAGGUAGGUCUGCG- -5' |
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1386 | 5' | -55.1 | NC_001335.1 | + | 32612 | 0.67 | 0.632615 |
Target: 5'- -cCACCGCCGcCG-CCGUuggCCGG-CGCg -3' miRNA: 3'- aaGUGGCGGUuGCaGGUA---GGUCuGCG- -5' |
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1386 | 5' | -55.1 | NC_001335.1 | + | 32551 | 0.69 | 0.512388 |
Target: 5'- -gUACCGCUucuCG-CCA-CCAGGCGCu -3' miRNA: 3'- aaGUGGCGGuu-GCaGGUaGGUCUGCG- -5' |
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1386 | 5' | -55.1 | NC_001335.1 | + | 30461 | 0.69 | 0.533719 |
Target: 5'- gUCACCGUCAACGUCguUgaaaccCCAGAgGa -3' miRNA: 3'- aAGUGGCGGUUGCAGguA------GGUCUgCg -5' |
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1386 | 5' | -55.1 | NC_001335.1 | + | 30291 | 0.68 | 0.588263 |
Target: 5'- gUCGCUGUaGAUGUCCAgcCCGGugGUc -3' miRNA: 3'- aAGUGGCGgUUGCAGGUa-GGUCugCG- -5' |
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1386 | 5' | -55.1 | NC_001335.1 | + | 29473 | 0.74 | 0.286447 |
Target: 5'- -cCGCUGCCAcACGUUCAUCaacccacugCAGGCGCg -3' miRNA: 3'- aaGUGGCGGU-UGCAGGUAG---------GUCUGCG- -5' |
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1386 | 5' | -55.1 | NC_001335.1 | + | 27180 | 0.78 | 0.146654 |
Target: 5'- -aCACCcCCAGCGUCCcgguguucAUCCAGAUGCc -3' miRNA: 3'- aaGUGGcGGUUGCAGG--------UAGGUCUGCG- -5' |
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1386 | 5' | -55.1 | NC_001335.1 | + | 25193 | 0.68 | 0.544504 |
Target: 5'- --aGCCGCCAGCG-CCAUC---ACGCu -3' miRNA: 3'- aagUGGCGGUUGCaGGUAGgucUGCG- -5' |
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1386 | 5' | -55.1 | NC_001335.1 | + | 24983 | 0.7 | 0.431092 |
Target: 5'- --uGCCuaCAACGUCC-UCCGGGCGg -3' miRNA: 3'- aagUGGcgGUUGCAGGuAGGUCUGCg -5' |
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1386 | 5' | -55.1 | NC_001335.1 | + | 23232 | 0.67 | 0.632615 |
Target: 5'- aUCACCGaCAACGaUCCuaCCGG-CGCa -3' miRNA: 3'- aAGUGGCgGUUGC-AGGuaGGUCuGCG- -5' |
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1386 | 5' | -55.1 | NC_001335.1 | + | 22785 | 0.73 | 0.293795 |
Target: 5'- cUgGuuGCCuuCGUCCAUCCAGAC-Ca -3' miRNA: 3'- aAgUggCGGuuGCAGGUAGGUCUGcG- -5' |
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1386 | 5' | -55.1 | NC_001335.1 | + | 22739 | 0.67 | 0.631504 |
Target: 5'- -aCACCG-CGACGUUCGUCCgcaccaaccccgcAGACGa -3' miRNA: 3'- aaGUGGCgGUUGCAGGUAGG-------------UCUGCg -5' |
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1386 | 5' | -55.1 | NC_001335.1 | + | 22655 | 0.78 | 0.142618 |
Target: 5'- -aCGCCGCCAGCGUUCugcugguuGUCCAgucGACGCu -3' miRNA: 3'- aaGUGGCGGUUGCAGG--------UAGGU---CUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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