miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1386 5' -55.1 NC_001335.1 + 33237 1.08 0.001021
Target:  5'- gUUCACCGCCAACGUCCAUCCAGACGCc -3'
miRNA:   3'- -AAGUGGCGGUUGCAGGUAGGUCUGCG- -5'
1386 5' -55.1 NC_001335.1 + 1333 0.7 0.47085
Target:  5'- -cCGCCGCCGGC-UCCAcuUCCGccgccaccgguGACGCc -3'
miRNA:   3'- aaGUGGCGGUUGcAGGU--AGGU-----------CUGCG- -5'
1386 5' -55.1 NC_001335.1 + 24983 0.7 0.431092
Target:  5'- --uGCCuaCAACGUCC-UCCGGGCGg -3'
miRNA:   3'- aagUGGcgGUUGCAGGuAGGUCUGCg -5'
1386 5' -55.1 NC_001335.1 + 46878 0.72 0.349337
Target:  5'- -cCACCGaccugcCCGACG-CCAUCCAGugGg -3'
miRNA:   3'- aaGUGGC------GGUUGCaGGUAGGUCugCg -5'
1386 5' -55.1 NC_001335.1 + 22785 0.73 0.293795
Target:  5'- cUgGuuGCCuuCGUCCAUCCAGAC-Ca -3'
miRNA:   3'- aAgUggCGGuuGCAGGUAGGUCUGcG- -5'
1386 5' -55.1 NC_001335.1 + 29473 0.74 0.286447
Target:  5'- -cCGCUGCCAcACGUUCAUCaacccacugCAGGCGCg -3'
miRNA:   3'- aaGUGGCGGU-UGCAGGUAG---------GUCUGCG- -5'
1386 5' -55.1 NC_001335.1 + 792 0.76 0.187907
Target:  5'- -gCGCCGCCuucggcAUGUUCGUCCAGAgGCu -3'
miRNA:   3'- aaGUGGCGGu-----UGCAGGUAGGUCUgCG- -5'
1386 5' -55.1 NC_001335.1 + 27180 0.78 0.146654
Target:  5'- -aCACCcCCAGCGUCCcgguguucAUCCAGAUGCc -3'
miRNA:   3'- aaGUGGcGGUUGCAGG--------UAGGUCUGCG- -5'
1386 5' -55.1 NC_001335.1 + 22655 0.78 0.142618
Target:  5'- -aCGCCGCCAGCGUUCugcugguuGUCCAgucGACGCu -3'
miRNA:   3'- aaGUGGCGGUUGCAGG--------UAGGU---CUGCG- -5'
1386 5' -55.1 NC_001335.1 + 30461 0.69 0.533719
Target:  5'- gUCACCGUCAACGUCguUgaaaccCCAGAgGa -3'
miRNA:   3'- aAGUGGCGGUUGCAGguA------GGUCUgCg -5'
1386 5' -55.1 NC_001335.1 + 1229 0.69 0.533719
Target:  5'- -aCGCCGCCuACGccgCCcgAUCCGGGgGCu -3'
miRNA:   3'- aaGUGGCGGuUGCa--GG--UAGGUCUgCG- -5'
1386 5' -55.1 NC_001335.1 + 25193 0.68 0.544504
Target:  5'- --aGCCGCCAGCG-CCAUC---ACGCu -3'
miRNA:   3'- aagUGGCGGUUGCaGGUAGgucUGCG- -5'
1386 5' -55.1 NC_001335.1 + 19524 0.66 0.720595
Target:  5'- -cCGCuCGCCAGCGaCCAggccgCgCAGGCGg -3'
miRNA:   3'- aaGUG-GCGGUUGCaGGUa----G-GUCUGCg -5'
1386 5' -55.1 NC_001335.1 + 35624 0.66 0.720595
Target:  5'- gUCAUCGUCAAgGaUgGUCCGGGCaGCa -3'
miRNA:   3'- aAGUGGCGGUUgCaGgUAGGUCUG-CG- -5'
1386 5' -55.1 NC_001335.1 + 21966 0.66 0.720595
Target:  5'- -gCGCCGUCAGCG-CCGauggccUCUAGugGg -3'
miRNA:   3'- aaGUGGCGGUUGCaGGU------AGGUCugCg -5'
1386 5' -55.1 NC_001335.1 + 44224 0.66 0.698907
Target:  5'- gUCAUCGCCGA---UCAUCCAGgguggcuguucGCGCa -3'
miRNA:   3'- aAGUGGCGGUUgcaGGUAGGUC-----------UGCG- -5'
1386 5' -55.1 NC_001335.1 + 9034 0.66 0.676954
Target:  5'- cUCACCGUCAGCGcggaaCCAgccgauggucUCCAucGGCGUg -3'
miRNA:   3'- aAGUGGCGGUUGCa----GGU----------AGGU--CUGCG- -5'
1386 5' -55.1 NC_001335.1 + 44406 0.67 0.641505
Target:  5'- cUCACCGCCGAgGgugaacUCCucuggucguggCCAGACGa -3'
miRNA:   3'- aAGUGGCGGUUgC------AGGua---------GGUCUGCg -5'
1386 5' -55.1 NC_001335.1 + 4159 0.67 0.610401
Target:  5'- aUCGCCGCCGGCuGcCUcgCCGGuCGg -3'
miRNA:   3'- aAGUGGCGGUUG-CaGGuaGGUCuGCg -5'
1386 5' -55.1 NC_001335.1 + 9173 0.67 0.609291
Target:  5'- -gCGCCGCC-GCGUCgGUCaucgaccgaagcuCGGGCGUg -3'
miRNA:   3'- aaGUGGCGGuUGCAGgUAG-------------GUCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.