Results 61 - 80 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13934 | 5' | -59.7 | NC_003521.1 | + | 110027 | 0.69 | 0.630047 |
Target: 5'- cGGCuCUCGUgGGCGC---GCUGCGGUg -3' miRNA: 3'- aCCG-GAGCGgUCGUGuguCGACGUCA- -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 101519 | 0.69 | 0.630047 |
Target: 5'- cGGCCga-CCAGCAgGC-GCUGCAGc -3' miRNA: 3'- aCCGGagcGGUCGUgUGuCGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 104503 | 0.69 | 0.630047 |
Target: 5'- aGGCCugcagcUCGCgCAGCuccacguccucGCugGGCUGCAGc -3' miRNA: 3'- aCCGG------AGCG-GUCG-----------UGugUCGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 220826 | 0.69 | 0.630047 |
Target: 5'- -aGCCgUCGCCGGUACGCucAGCggagUGCGGUg -3' miRNA: 3'- acCGG-AGCGGUCGUGUG--UCG----ACGUCA- -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 33513 | 0.69 | 0.630047 |
Target: 5'- cGGCCUgcuggcgugUGCCAGCucaACGcCGGCUGCAa- -3' miRNA: 3'- aCCGGA---------GCGGUCG---UGU-GUCGACGUca -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 141386 | 0.69 | 0.630047 |
Target: 5'- aGGUgUCGCgGGCGCAgaAGCUGCGc- -3' miRNA: 3'- aCCGgAGCGgUCGUGUg-UCGACGUca -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 223922 | 0.69 | 0.639947 |
Target: 5'- aGGCCgaggCGCagcGCugGCAGCUggGCAGg -3' miRNA: 3'- aCCGGa---GCGgu-CGugUGUCGA--CGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 124425 | 0.69 | 0.639947 |
Target: 5'- aGGCgcuaUCGCCuGCACGgCAGCggcgGCGGa -3' miRNA: 3'- aCCGg---AGCGGuCGUGU-GUCGa---CGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 143826 | 0.69 | 0.649841 |
Target: 5'- cGuGCC-CGCCAGCGaugGCGGCUGCu-- -3' miRNA: 3'- aC-CGGaGCGGUCGUg--UGUCGACGuca -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 63419 | 0.69 | 0.649841 |
Target: 5'- cGGCgcgucgaUCGUCAGCccGCGCAGCUGCu-- -3' miRNA: 3'- aCCGg------AGCGGUCG--UGUGUCGACGuca -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 130266 | 0.69 | 0.649841 |
Target: 5'- cGGCCguugcgCGCCGccGCcgGCGCAGCgGCAGc -3' miRNA: 3'- aCCGGa-----GCGGU--CG--UGUGUCGaCGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 136919 | 0.69 | 0.649841 |
Target: 5'- cGGCggCGCgGGuCGCACGGCguUGCGGUa -3' miRNA: 3'- aCCGgaGCGgUC-GUGUGUCG--ACGUCA- -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 60278 | 0.69 | 0.659722 |
Target: 5'- aGGCCggUGCUGuCGCGCuGCUGCAGg -3' miRNA: 3'- aCCGGa-GCGGUcGUGUGuCGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 149200 | 0.69 | 0.659722 |
Target: 5'- -aGCacacgCGCCAGCACGgcGCUGCGGUg -3' miRNA: 3'- acCGga---GCGGUCGUGUguCGACGUCA- -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 28401 | 0.69 | 0.659722 |
Target: 5'- -cGCCgUCGCCAGgGCAaGGCUGguGg -3' miRNA: 3'- acCGG-AGCGGUCgUGUgUCGACguCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 29461 | 0.69 | 0.659722 |
Target: 5'- aGGUaCUCGUugcgCAGCGaggGCAGCUGCAGg -3' miRNA: 3'- aCCG-GAGCG----GUCGUg--UGUCGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 239647 | 0.69 | 0.659722 |
Target: 5'- gGGCCgcgagcugCGCCgccgguggcAGCACACGggcaucccGCUGCAGa -3' miRNA: 3'- aCCGGa-------GCGG---------UCGUGUGU--------CGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 183869 | 0.69 | 0.659723 |
Target: 5'- -aGUCUCGCCAaCACGuuacucggcauCAGCUGCAGa -3' miRNA: 3'- acCGGAGCGGUcGUGU-----------GUCGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 201668 | 0.69 | 0.659723 |
Target: 5'- gGGCCgcgagcugCGCCgccgguggcAGCACACGggcaucccGCUGCAGa -3' miRNA: 3'- aCCGGa-------GCGG---------UCGUGUGU--------CGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 103566 | 0.69 | 0.659723 |
Target: 5'- gGGCCcaggUCGCCcGCGCAgaAGCUGCGc- -3' miRNA: 3'- aCCGG----AGCGGuCGUGUg-UCGACGUca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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