miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 164024 0.7 0.604853
Target:  5'- -uGUUGCCGcCGCCGUgagcgcCGCUGUUGCc -3'
miRNA:   3'- gcCGACGGCaGUGGCA------GCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 193188 0.7 0.608713
Target:  5'- gGGCUcGCCGUCcugauggcccugacgGCCuUCGC-GCUGCUg -3'
miRNA:   3'- gCCGA-CGGCAG---------------UGGcAGCGaCGACGA- -5'
13935 5' -60.7 NC_003521.1 + 73099 0.72 0.439177
Target:  5'- cCGcGCccagGCCGUCGCgGUgagccUGCUGCUGCUg -3'
miRNA:   3'- -GC-CGa---CGGCAGUGgCA-----GCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 31351 0.72 0.474027
Target:  5'- cCGGCcGCCGcCGUCGUCGCUGUUGg- -3'
miRNA:   3'- -GCCGaCGGCaGUGGCAGCGACGACga -5'
13935 5' -60.7 NC_003521.1 + 28587 0.71 0.51021
Target:  5'- cCGGCgguccgcagGCCG-CGCCGgggUCGCUGCcGCUg -3'
miRNA:   3'- -GCCGa--------CGGCaGUGGC---AGCGACGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 111438 0.71 0.528731
Target:  5'- gCGGC-GCCGUCGCCGggGCgGCcGCg -3'
miRNA:   3'- -GCCGaCGGCAGUGGCagCGaCGaCGa -5'
13935 5' -60.7 NC_003521.1 + 31263 0.71 0.551274
Target:  5'- cCGGC-GCCGUCGucgccccaucccgauCCG-CaGCUGCUGCUg -3'
miRNA:   3'- -GCCGaCGGCAGU---------------GGCaG-CGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 143809 0.7 0.566465
Target:  5'- gCGGCUGCugcuCGUCGCCGgcggCGC-GCgUGCg -3'
miRNA:   3'- -GCCGACG----GCAGUGGCa---GCGaCG-ACGa -5'
13935 5' -60.7 NC_003521.1 + 17300 0.7 0.576014
Target:  5'- gGuGCUGCCGUUGUCGUCGCUccucuucccGCUGUUg -3'
miRNA:   3'- gC-CGACGGCAGUGGCAGCGA---------CGACGA- -5'
13935 5' -60.7 NC_003521.1 + 239714 0.7 0.576014
Target:  5'- gGGCcaccGCUGUCcCCGagcccgCGCUGCUGCg -3'
miRNA:   3'- gCCGa---CGGCAGuGGCa-----GCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 218433 0.66 0.79219
Target:  5'- gGGUcGUCGUCACCuacuaccUGCUGCUGUa -3'
miRNA:   3'- gCCGaCGGCAGUGGca-----GCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 97064 0.66 0.783541
Target:  5'- aCGcGCgaucgUGCCcguagCGCCGcCGCUGCUGCc -3'
miRNA:   3'- -GC-CG-----ACGGca---GUGGCaGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 204727 0.69 0.624178
Target:  5'- gGGCUGgCGUgGCgCGgcuUCGCgUGCUGCUu -3'
miRNA:   3'- gCCGACgGCAgUG-GC---AGCG-ACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 134151 0.69 0.653191
Target:  5'- -uGCUGCUGUagCACCGaUUGCaGCUGCUc -3'
miRNA:   3'- gcCGACGGCA--GUGGC-AGCGaCGACGA- -5'
13935 5' -60.7 NC_003521.1 + 118543 0.68 0.69163
Target:  5'- aGuGCUGCUGcUACCGcCGCUGgUGCc -3'
miRNA:   3'- gC-CGACGGCaGUGGCaGCGACgACGa -5'
13935 5' -60.7 NC_003521.1 + 127027 0.68 0.701147
Target:  5'- gGGcCUGCCGgacuUCA-CGUCGCUGCaguucgUGCUg -3'
miRNA:   3'- gCC-GACGGC----AGUgGCAGCGACG------ACGA- -5'
13935 5' -60.7 NC_003521.1 + 191401 0.68 0.710613
Target:  5'- gCGGC-GCUGUCGCCGUCaGC--CUGCc -3'
miRNA:   3'- -GCCGaCGGCAGUGGCAG-CGacGACGa -5'
13935 5' -60.7 NC_003521.1 + 160776 0.67 0.738622
Target:  5'- aGGCUGCCGcccccuccUC-CCGcCGCgGuCUGCUg -3'
miRNA:   3'- gCCGACGGC--------AGuGGCaGCGaC-GACGA- -5'
13935 5' -60.7 NC_003521.1 + 166935 0.67 0.755082
Target:  5'- aCGGgaUGCUGUCGcagcucauccgcuacCCGUCGCUacggcaccagcaacaGCUGCUa -3'
miRNA:   3'- -GCCg-ACGGCAGU---------------GGCAGCGA---------------CGACGA- -5'
13935 5' -60.7 NC_003521.1 + 143161 0.67 0.756892
Target:  5'- cCGGCUgauggcGCCGcUCuccaagggAUCGcCGCUGCUGCg -3'
miRNA:   3'- -GCCGA------CGGC-AG--------UGGCaGCGACGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.