miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13936 3' -61.2 NC_003521.1 + 149930 0.66 0.814863
Target:  5'- ---cGGGGCCCaCGa-UGUCGGGcaGCCCg -3'
miRNA:   3'- auuuUCCCGGG-GCcaGCGGCCC--UGGG- -5'
13936 3' -61.2 NC_003521.1 + 134040 0.66 0.787291
Target:  5'- -uGGAGGaaaaacuccgccgcGuCCCCGGaaUCGCCGGG-CCUg -3'
miRNA:   3'- auUUUCC--------------C-GGGGCC--AGCGGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 44132 0.66 0.789856
Target:  5'- ----uGGGCgacggCCCGGgagccgGCCGGGGCgCCu -3'
miRNA:   3'- auuuuCCCG-----GGGCCag----CGGCCCUG-GG- -5'
13936 3' -61.2 NC_003521.1 + 92605 0.66 0.789856
Target:  5'- -cGGAGGGUUCCGGgagCGaggcgggcggaUGGGAUCCg -3'
miRNA:   3'- auUUUCCCGGGGCCa--GCg----------GCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 4833 0.66 0.796642
Target:  5'- -cGGAGGccggcguguGCCCCGGcCGUagugacuccccgGGGACCCu -3'
miRNA:   3'- auUUUCC---------CGGGGCCaGCGg-----------CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 191777 0.67 0.754807
Target:  5'- --cGAGcGCCCCGGUCGCauucgacgucucUGGGAaugCCg -3'
miRNA:   3'- auuUUCcCGGGGCCAGCG------------GCCCUg--GG- -5'
13936 3' -61.2 NC_003521.1 + 138130 0.67 0.763731
Target:  5'- ---cAGGcGCUCgGG-CGUCGGGGCUCu -3'
miRNA:   3'- auuuUCC-CGGGgCCaGCGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 29703 0.67 0.733937
Target:  5'- aUGAAcuGGCCCaCGcgcugguuguagcuGUCaCCGGGGCCCg -3'
miRNA:   3'- -AUUUucCCGGG-GC--------------CAGcGGCCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 215639 0.67 0.763731
Target:  5'- gGAcGGGGCUCCgcauGGUCGCggCGGGAgCa -3'
miRNA:   3'- aUUuUCCCGGGG----CCAGCG--GCCCUgGg -5'
13936 3' -61.2 NC_003521.1 + 154559 0.67 0.754807
Target:  5'- -----cGGCCCCGGaCGCCGuGccGCCCc -3'
miRNA:   3'- auuuucCCGGGGCCaGCGGCcC--UGGG- -5'
13936 3' -61.2 NC_003521.1 + 63534 0.67 0.74579
Target:  5'- ------uGCaCCCGGUCGCCGaggaaGGACUCg -3'
miRNA:   3'- auuuuccCG-GGGCCAGCGGC-----CCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 224297 0.67 0.736685
Target:  5'- -cAGGGGcgacggcgcccGCCCCGacCGCCGGG-CCCg -3'
miRNA:   3'- auUUUCC-----------CGGGGCcaGCGGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 226068 0.67 0.718243
Target:  5'- cGAAGGcGcGCCCCGGcCGCgGccGGCCCg -3'
miRNA:   3'- aUUUUC-C-CGGGGCCaGCGgCc-CUGGG- -5'
13936 3' -61.2 NC_003521.1 + 197380 0.67 0.7275
Target:  5'- -uGGAGaGGCUCUGGcUCGCCgcccGGGACUg -3'
miRNA:   3'- auUUUC-CCGGGGCC-AGCGG----CCCUGGg -5'
13936 3' -61.2 NC_003521.1 + 226925 0.67 0.736685
Target:  5'- -----cGGCCCCcuccgCGCCGGGcCCCc -3'
miRNA:   3'- auuuucCCGGGGcca--GCGGCCCuGGG- -5'
13936 3' -61.2 NC_003521.1 + 224040 0.67 0.74579
Target:  5'- ----cGGGCgCC-GUCGCCccuGGGACUCu -3'
miRNA:   3'- auuuuCCCGgGGcCAGCGG---CCCUGGG- -5'
13936 3' -61.2 NC_003521.1 + 34982 0.67 0.754807
Target:  5'- ----cGGGCgCagaaGGUCuCCGGGGCCa -3'
miRNA:   3'- auuuuCCCGgGg---CCAGcGGCCCUGGg -5'
13936 3' -61.2 NC_003521.1 + 86213 0.67 0.754807
Target:  5'- -cGAAGGGCggCGGcaCGCCGGcGGCCUu -3'
miRNA:   3'- auUUUCCCGggGCCa-GCGGCC-CUGGG- -5'
13936 3' -61.2 NC_003521.1 + 210927 0.67 0.754807
Target:  5'- ----cGGGUCgUCGGUCGUCGucGCCCa -3'
miRNA:   3'- auuuuCCCGG-GGCCAGCGGCccUGGG- -5'
13936 3' -61.2 NC_003521.1 + 62235 0.67 0.763731
Target:  5'- cAGGAGGGCgCCCGGcuggacgCGCgGcuggagaaGGACCUg -3'
miRNA:   3'- aUUUUCCCG-GGGCCa------GCGgC--------CCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.