miRNA display CGI


Results 61 - 80 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 142771 0.72 0.885047
Target:  5'- aGUGGUgGCGGCGgccACGACGGUGGUuGCGc -3'
miRNA:   3'- -CACCA-UGCUGC---UGCUGUCGCUAcUGC- -5'
13937 5' -52.8 NC_003521.1 + 80277 0.72 0.889739
Target:  5'- uUGGUuCGAaGACGACGGCGcguccgacgugcugGUGACGg -3'
miRNA:   3'- cACCAuGCUgCUGCUGUCGC--------------UACUGC- -5'
13937 5' -52.8 NC_003521.1 + 171362 0.72 0.891718
Target:  5'- -aGGUACGcgguaACGGCGggcggggagGCGGCGGUGGCa -3'
miRNA:   3'- caCCAUGC-----UGCUGC---------UGUCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 18084 0.72 0.891718
Target:  5'- cUGGa--GACGACGGCcGCGggGACGg -3'
miRNA:   3'- cACCaugCUGCUGCUGuCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 116469 0.72 0.891718
Target:  5'- cGUGGUgggacacgugGCGGCGAUGAagAGCGuccGUGACGg -3'
miRNA:   3'- -CACCA----------UGCUGCUGCUg-UCGC---UACUGC- -5'
13937 5' -52.8 NC_003521.1 + 102766 0.72 0.898169
Target:  5'- -cGGUagaGCGGCaGCGGCugcGCGAUGACGc -3'
miRNA:   3'- caCCA---UGCUGcUGCUGu--CGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 28246 0.72 0.898169
Target:  5'- -aGGaagaagACGGCGccgagaggaacaGCGGCGGCGAUGACa -3'
miRNA:   3'- caCCa-----UGCUGC------------UGCUGUCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 78860 0.72 0.89817
Target:  5'- gGUGGUA--GCGcCGACGGCGcUGGCGg -3'
miRNA:   3'- -CACCAUgcUGCuGCUGUCGCuACUGC- -5'
13937 5' -52.8 NC_003521.1 + 91867 0.72 0.904399
Target:  5'- -cGGaccAgGACGGCGGCGGCGGUG-CGa -3'
miRNA:   3'- caCCa--UgCUGCUGCUGUCGCUACuGC- -5'
13937 5' -52.8 NC_003521.1 + 181498 0.72 0.904399
Target:  5'- cGUGGccUACGugGucaACGACGGCGAUcGGCc -3'
miRNA:   3'- -CACC--AUGCugC---UGCUGUCGCUA-CUGc -5'
13937 5' -52.8 NC_003521.1 + 79994 0.72 0.904399
Target:  5'- -cGGUACGAgUGuCGGCGGCGGUGGu- -3'
miRNA:   3'- caCCAUGCU-GCuGCUGUCGCUACUgc -5'
13937 5' -52.8 NC_003521.1 + 167529 0.71 0.910404
Target:  5'- gGUGGUGacgacaGACGGCGAUAGaGcgGACGu -3'
miRNA:   3'- -CACCAUg-----CUGCUGCUGUCgCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 216291 0.71 0.910404
Target:  5'- cGUGGagcggACGACGuuGGCGGgGGUGAUGu -3'
miRNA:   3'- -CACCa----UGCUGCugCUGUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 233441 0.71 0.910405
Target:  5'- -cGGUAaCGGCGgccgccACGGCGGCGcgGACa -3'
miRNA:   3'- caCCAU-GCUGC------UGCUGUCGCuaCUGc -5'
13937 5' -52.8 NC_003521.1 + 163905 0.71 0.916183
Target:  5'- -cGGUGCGuuacucggguGCGGCGGCAGCGGcaACGa -3'
miRNA:   3'- caCCAUGC----------UGCUGCUGUCGCUacUGC- -5'
13937 5' -52.8 NC_003521.1 + 142622 0.71 0.916183
Target:  5'- -aGGagGCGGCGGCGGCcgcGGCGGccgUGGCGg -3'
miRNA:   3'- caCCa-UGCUGCUGCUG---UCGCU---ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 52644 0.71 0.916183
Target:  5'- -aGGccGCGACGGCGGuCAG-GAUGACGc -3'
miRNA:   3'- caCCa-UGCUGCUGCU-GUCgCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 117871 0.71 0.916183
Target:  5'- -gGGUAgGACGGgGGCGGCGGUagGugGu -3'
miRNA:   3'- caCCAUgCUGCUgCUGUCGCUA--CugC- -5'
13937 5' -52.8 NC_003521.1 + 145862 0.71 0.921733
Target:  5'- cUGGgccCGGCGGCgGGCGGCGccGACGa -3'
miRNA:   3'- cACCau-GCUGCUG-CUGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 116881 0.71 0.921733
Target:  5'- aGUGGcGCGGCuGCGGCGGCGcgccGGCGg -3'
miRNA:   3'- -CACCaUGCUGcUGCUGUCGCua--CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.