Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13938 | 3' | -55.7 | NC_003521.1 | + | 215631 | 0.68 | 0.900334 |
Target: 5'- gUCGGUGAGgacgggGCUCCGcauGGucGCGGCGGGAg -3' miRNA: 3'- -AGUUACUCg-----CGAGGC---UC--CGCCGUUCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 130416 | 0.68 | 0.906478 |
Target: 5'- cCAggGcguAGCGCUCgGuGGCGGCAGc- -3' miRNA: 3'- aGUuaC---UCGCGAGgCuCCGCCGUUcu -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 238424 | 0.68 | 0.912397 |
Target: 5'- cCAGUGcuCGCggUCGAGGUcgGGCAGGAg -3' miRNA: 3'- aGUUACucGCGa-GGCUCCG--CCGUUCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 202892 | 0.68 | 0.912397 |
Target: 5'- cCAGUGcuCGCggUCGAGGUcgGGCAGGAg -3' miRNA: 3'- aGUUACucGCGa-GGCUCCG--CCGUUCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 43235 | 0.68 | 0.914702 |
Target: 5'- gUCGGUGGGCGCcggcgggUCGcgcucgcugggcugcAGGCGGCAgcGGAu -3' miRNA: 3'- -AGUUACUCGCGa------GGC---------------UCCGCCGU--UCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 117733 | 0.68 | 0.91809 |
Target: 5'- gUCGccGGGUGUggagGAGGCGGCGGGGg -3' miRNA: 3'- -AGUuaCUCGCGagg-CUCCGCCGUUCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 142489 | 0.68 | 0.91809 |
Target: 5'- ----cGAGCGCagcgaCGAGGCcauGGCGAGGa -3' miRNA: 3'- aguuaCUCGCGag---GCUCCG---CCGUUCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 73630 | 0.67 | 0.923555 |
Target: 5'- aCGAUGAGCGUgcugagggCCGuGcGCGGCGc-- -3' miRNA: 3'- aGUUACUCGCGa-------GGCuC-CGCCGUucu -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 203711 | 0.67 | 0.923555 |
Target: 5'- gCGAcUGcGGUGUU-CGAGGCGGCGGGGg -3' miRNA: 3'- aGUU-AC-UCGCGAgGCUCCGCCGUUCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 113055 | 0.67 | 0.928791 |
Target: 5'- ----aGAGCGCgugcCCGuAGGCGGCcAGc -3' miRNA: 3'- aguuaCUCGCGa---GGC-UCCGCCGuUCu -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 163757 | 0.67 | 0.938576 |
Target: 5'- aCAGcG-GCGCUCaCGGcGGCGGCAAc- -3' miRNA: 3'- aGUUaCuCGCGAG-GCU-CCGCCGUUcu -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 240737 | 0.67 | 0.943128 |
Target: 5'- --cGUGAGCuGC-CgGAGGCGGCGc-- -3' miRNA: 3'- aguUACUCG-CGaGgCUCCGCCGUucu -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 91937 | 0.67 | 0.943128 |
Target: 5'- gCGGUGgacccGGCgGCggaccCCGuGGCGGCGAGGg -3' miRNA: 3'- aGUUAC-----UCG-CGa----GGCuCCGCCGUUCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 27456 | 0.66 | 0.947031 |
Target: 5'- uUCGgccGUGAGCGCcaggcuggccaggUCCGucauguGGCGGUcgGAGAa -3' miRNA: 3'- -AGU---UACUCGCG-------------AGGCu-----CCGCCG--UUCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 168466 | 0.66 | 0.954297 |
Target: 5'- ----gGGGCGCUgguggcuggucaggUCGAucaugGGCGGCGAGAc -3' miRNA: 3'- aguuaCUCGCGA--------------GGCU-----CCGCCGUUCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 216119 | 0.66 | 0.955439 |
Target: 5'- ---uUGAGCGCggcgCgGAGGCcgcGGCAgaGGAa -3' miRNA: 3'- aguuACUCGCGa---GgCUCCG---CCGU--UCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 45540 | 0.66 | 0.959104 |
Target: 5'- ----cGGGCGCcCCGucagcGGCGGCGAa- -3' miRNA: 3'- aguuaCUCGCGaGGCu----CCGCCGUUcu -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 90786 | 0.66 | 0.959104 |
Target: 5'- gUUAGUGGGCGUaCCuAGGgGGCGuGAc -3' miRNA: 3'- -AGUUACUCGCGaGGcUCCgCCGUuCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 103171 | 0.66 | 0.959104 |
Target: 5'- cCAuUGAGCGCUCCcugucGGGCGuGCu--- -3' miRNA: 3'- aGUuACUCGCGAGGc----UCCGC-CGuucu -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 113171 | 0.66 | 0.959104 |
Target: 5'- -gAcgGGGCcCUCCcAGGCGGCGAu- -3' miRNA: 3'- agUuaCUCGcGAGGcUCCGCCGUUcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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