miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 3' -55.7 NC_003521.1 + 6687 0.97 0.026915
Target:  5'- gUCAAUGAGCGUcCCGAGGCGGCAAGAc -3'
miRNA:   3'- -AGUUACUCGCGaGGCUCCGCCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 114375 0.78 0.394769
Target:  5'- cCGGUGAGCagaUCCGAGGCGGCGcGGu -3'
miRNA:   3'- aGUUACUCGcg-AGGCUCCGCCGUuCU- -5'
13938 3' -55.7 NC_003521.1 + 191671 0.74 0.629047
Target:  5'- gCGAUGAG-GUcgCCGAGGaCGGCGAGGc -3'
miRNA:   3'- aGUUACUCgCGa-GGCUCC-GCCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 102338 0.72 0.708569
Target:  5'- --cGUGGGCGCcgacgCCGGGGUGGCGgcAGGc -3'
miRNA:   3'- aguUACUCGCGa----GGCUCCGCCGU--UCU- -5'
13938 3' -55.7 NC_003521.1 + 135390 0.72 0.718317
Target:  5'- ----cGGGCGCcaaaccgugCCGAGGCGgGCGGGAa -3'
miRNA:   3'- aguuaCUCGCGa--------GGCUCCGC-CGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 52179 0.72 0.727995
Target:  5'- aUCGAacGuGUGCcgCCGGGGCGGCGAGc -3'
miRNA:   3'- -AGUUa-CuCGCGa-GGCUCCGCCGUUCu -5'
13938 3' -55.7 NC_003521.1 + 105026 0.71 0.747104
Target:  5'- aCGG-GAGCGCUUCGAGGaCGGCc--- -3'
miRNA:   3'- aGUUaCUCGCGAGGCUCC-GCCGuucu -5'
13938 3' -55.7 NC_003521.1 + 154303 0.71 0.747104
Target:  5'- --uAUGGGCGC-CUGccGCGGCAAGAg -3'
miRNA:   3'- aguUACUCGCGaGGCucCGCCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 114790 0.71 0.775023
Target:  5'- aUCGAUG-GUGC-CCGuGGCGGCGguGGGc -3'
miRNA:   3'- -AGUUACuCGCGaGGCuCCGCCGU--UCU- -5'
13938 3' -55.7 NC_003521.1 + 117046 0.71 0.775023
Target:  5'- cCAGUGuuuCGC-CCGAGGCGGCcgcGGAg -3'
miRNA:   3'- aGUUACuc-GCGaGGCUCCGCCGu--UCU- -5'
13938 3' -55.7 NC_003521.1 + 4615 0.71 0.793038
Target:  5'- gCGAUGAGCGaaCCGccGGCGGCGGu- -3'
miRNA:   3'- aGUUACUCGCgaGGCu-CCGCCGUUcu -5'
13938 3' -55.7 NC_003521.1 + 17168 0.7 0.835507
Target:  5'- aCGGUGAuuggagGCGCggCCGAGGgGGuCGAGGc -3'
miRNA:   3'- aGUUACU------CGCGa-GGCUCCgCC-GUUCU- -5'
13938 3' -55.7 NC_003521.1 + 186533 0.7 0.843499
Target:  5'- cCAGcGGGgGCUCCGuGGgaGGCAGGGc -3'
miRNA:   3'- aGUUaCUCgCGAGGCuCCg-CCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 134892 0.69 0.851307
Target:  5'- ----cGAGaGCUCCGAGGUGGCc--- -3'
miRNA:   3'- aguuaCUCgCGAGGCUCCGCCGuucu -5'
13938 3' -55.7 NC_003521.1 + 146818 0.69 0.858172
Target:  5'- aCGAcGAGCGCUCCGccugucuGGGgGGCGc-- -3'
miRNA:   3'- aGUUaCUCGCGAGGC-------UCCgCCGUucu -5'
13938 3' -55.7 NC_003521.1 + 192347 0.69 0.866346
Target:  5'- -aGAUGGGUGCUCgGugcucgcacGGGCGGCGuuGGGg -3'
miRNA:   3'- agUUACUCGCGAGgC---------UCCGCCGU--UCU- -5'
13938 3' -55.7 NC_003521.1 + 35084 0.68 0.893318
Target:  5'- ----cGGGCGCUCgacaugccggauuCGAGGCGGCccGAg -3'
miRNA:   3'- aguuaCUCGCGAG-------------GCUCCGCCGuuCU- -5'
13938 3' -55.7 NC_003521.1 + 53847 0.68 0.893967
Target:  5'- -aAGUGA--GCUUCGAGGCGGCcccGGGAg -3'
miRNA:   3'- agUUACUcgCGAGGCUCCGCCG---UUCU- -5'
13938 3' -55.7 NC_003521.1 + 54171 0.68 0.893967
Target:  5'- cCAAgggGGGCGCcgguggCgGGGGCGGCGGcGAa -3'
miRNA:   3'- aGUUa--CUCGCGa-----GgCUCCGCCGUU-CU- -5'
13938 3' -55.7 NC_003521.1 + 215631 0.68 0.900334
Target:  5'- gUCGGUGAGgacgggGCUCCGcauGGucGCGGCGGGAg -3'
miRNA:   3'- -AGUUACUCg-----CGAGGC---UC--CGCCGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.