miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 3' -55.7 NC_003521.1 + 116879 0.66 0.965802
Target:  5'- gCAGUG-GCGCggCUGcGGCGGCGc-- -3'
miRNA:   3'- aGUUACuCGCGa-GGCuCCGCCGUucu -5'
13938 3' -55.7 NC_003521.1 + 163757 0.67 0.938576
Target:  5'- aCAGcG-GCGCUCaCGGcGGCGGCAAc- -3'
miRNA:   3'- aGUUaCuCGCGAG-GCU-CCGCCGUUcu -5'
13938 3' -55.7 NC_003521.1 + 91937 0.67 0.943128
Target:  5'- gCGGUGgacccGGCgGCggaccCCGuGGCGGCGAGGg -3'
miRNA:   3'- aGUUAC-----UCG-CGa----GGCuCCGCCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 27456 0.66 0.947031
Target:  5'- uUCGgccGUGAGCGCcaggcuggccaggUCCGucauguGGCGGUcgGAGAa -3'
miRNA:   3'- -AGU---UACUCGCG-------------AGGCu-----CCGCCG--UUCU- -5'
13938 3' -55.7 NC_003521.1 + 168466 0.66 0.954297
Target:  5'- ----gGGGCGCUgguggcuggucaggUCGAucaugGGCGGCGAGAc -3'
miRNA:   3'- aguuaCUCGCGA--------------GGCU-----CCGCCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 216119 0.66 0.955439
Target:  5'- ---uUGAGCGCggcgCgGAGGCcgcGGCAgaGGAa -3'
miRNA:   3'- aguuACUCGCGa---GgCUCCG---CCGU--UCU- -5'
13938 3' -55.7 NC_003521.1 + 45540 0.66 0.959104
Target:  5'- ----cGGGCGCcCCGucagcGGCGGCGAa- -3'
miRNA:   3'- aguuaCUCGCGaGGCu----CCGCCGUUcu -5'
13938 3' -55.7 NC_003521.1 + 24175 0.66 0.962557
Target:  5'- cUCGGaaagGAGCGaagCCG-GGCGGCAugggcGGAa -3'
miRNA:   3'- -AGUUa---CUCGCga-GGCuCCGCCGU-----UCU- -5'
13938 3' -55.7 NC_003521.1 + 102787 0.66 0.965487
Target:  5'- gCGAUGAcGCGCcggcggCCGccagcucGGGCGGCAGc- -3'
miRNA:   3'- aGUUACU-CGCGa-----GGC-------UCCGCCGUUcu -5'
13938 3' -55.7 NC_003521.1 + 238424 0.68 0.912397
Target:  5'- cCAGUGcuCGCggUCGAGGUcgGGCAGGAg -3'
miRNA:   3'- aGUUACucGCGa-GGCUCCG--CCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 215631 0.68 0.900334
Target:  5'- gUCGGUGAGgacgggGCUCCGcauGGucGCGGCGGGAg -3'
miRNA:   3'- -AGUUACUCg-----CGAGGC---UC--CGCCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 35084 0.68 0.893318
Target:  5'- ----cGGGCGCUCgacaugccggauuCGAGGCGGCccGAg -3'
miRNA:   3'- aguuaCUCGCGAG-------------GCUCCGCCGuuCU- -5'
13938 3' -55.7 NC_003521.1 + 102338 0.72 0.708569
Target:  5'- --cGUGGGCGCcgacgCCGGGGUGGCGgcAGGc -3'
miRNA:   3'- aguUACUCGCGa----GGCUCCGCCGU--UCU- -5'
13938 3' -55.7 NC_003521.1 + 135390 0.72 0.718317
Target:  5'- ----cGGGCGCcaaaccgugCCGAGGCGgGCGGGAa -3'
miRNA:   3'- aguuaCUCGCGa--------GGCUCCGC-CGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 52179 0.72 0.727995
Target:  5'- aUCGAacGuGUGCcgCCGGGGCGGCGAGc -3'
miRNA:   3'- -AGUUa-CuCGCGa-GGCUCCGCCGUUCu -5'
13938 3' -55.7 NC_003521.1 + 105026 0.71 0.747104
Target:  5'- aCGG-GAGCGCUUCGAGGaCGGCc--- -3'
miRNA:   3'- aGUUaCUCGCGAGGCUCC-GCCGuucu -5'
13938 3' -55.7 NC_003521.1 + 117046 0.71 0.775023
Target:  5'- cCAGUGuuuCGC-CCGAGGCGGCcgcGGAg -3'
miRNA:   3'- aGUUACuc-GCGaGGCUCCGCCGu--UCU- -5'
13938 3' -55.7 NC_003521.1 + 186533 0.7 0.843499
Target:  5'- cCAGcGGGgGCUCCGuGGgaGGCAGGGc -3'
miRNA:   3'- aGUUaCUCgCGAGGCuCCg-CCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 146818 0.69 0.858172
Target:  5'- aCGAcGAGCGCUCCGccugucuGGGgGGCGc-- -3'
miRNA:   3'- aGUUaCUCGCGAGGC-------UCCgCCGUucu -5'
13938 3' -55.7 NC_003521.1 + 192347 0.69 0.866346
Target:  5'- -aGAUGGGUGCUCgGugcucgcacGGGCGGCGuuGGGg -3'
miRNA:   3'- agUUACUCGCGAGgC---------UCCGCCGU--UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.