miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 3' -55.7 NC_003521.1 + 4615 0.71 0.793038
Target:  5'- gCGAUGAGCGaaCCGccGGCGGCGGu- -3'
miRNA:   3'- aGUUACUCGCgaGGCu-CCGCCGUUcu -5'
13938 3' -55.7 NC_003521.1 + 6687 0.97 0.026915
Target:  5'- gUCAAUGAGCGUcCCGAGGCGGCAAGAc -3'
miRNA:   3'- -AGUUACUCGCGaGGCUCCGCCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 17168 0.7 0.835507
Target:  5'- aCGGUGAuuggagGCGCggCCGAGGgGGuCGAGGc -3'
miRNA:   3'- aGUUACU------CGCGa-GGCUCCgCC-GUUCU- -5'
13938 3' -55.7 NC_003521.1 + 24175 0.66 0.962557
Target:  5'- cUCGGaaagGAGCGaagCCG-GGCGGCAugggcGGAa -3'
miRNA:   3'- -AGUUa---CUCGCga-GGCuCCGCCGU-----UCU- -5'
13938 3' -55.7 NC_003521.1 + 27456 0.66 0.947031
Target:  5'- uUCGgccGUGAGCGCcaggcuggccaggUCCGucauguGGCGGUcgGAGAa -3'
miRNA:   3'- -AGU---UACUCGCG-------------AGGCu-----CCGCCG--UUCU- -5'
13938 3' -55.7 NC_003521.1 + 27972 0.66 0.965802
Target:  5'- cCAGgcGGCGCUCaCGGccacGGCGGCAGc- -3'
miRNA:   3'- aGUUacUCGCGAG-GCU----CCGCCGUUcu -5'
13938 3' -55.7 NC_003521.1 + 32014 0.66 0.959104
Target:  5'- cCGAUGuGCcggUCGAGGCGGCGgAGGc -3'
miRNA:   3'- aGUUACuCGcgaGGCUCCGCCGU-UCU- -5'
13938 3' -55.7 NC_003521.1 + 35084 0.68 0.893318
Target:  5'- ----cGGGCGCUCgacaugccggauuCGAGGCGGCccGAg -3'
miRNA:   3'- aguuaCUCGCGAG-------------GCUCCGCCGuuCU- -5'
13938 3' -55.7 NC_003521.1 + 43235 0.68 0.914702
Target:  5'- gUCGGUGGGCGCcggcgggUCGcgcucgcugggcugcAGGCGGCAgcGGAu -3'
miRNA:   3'- -AGUUACUCGCGa------GGC---------------UCCGCCGU--UCU- -5'
13938 3' -55.7 NC_003521.1 + 45540 0.66 0.959104
Target:  5'- ----cGGGCGCcCCGucagcGGCGGCGAa- -3'
miRNA:   3'- aguuaCUCGCGaGGCu----CCGCCGUUcu -5'
13938 3' -55.7 NC_003521.1 + 52179 0.72 0.727995
Target:  5'- aUCGAacGuGUGCcgCCGGGGCGGCGAGc -3'
miRNA:   3'- -AGUUa-CuCGCGa-GGCUCCGCCGUUCu -5'
13938 3' -55.7 NC_003521.1 + 53847 0.68 0.893967
Target:  5'- -aAGUGA--GCUUCGAGGCGGCcccGGGAg -3'
miRNA:   3'- agUUACUcgCGAGGCUCCGCCG---UUCU- -5'
13938 3' -55.7 NC_003521.1 + 54171 0.68 0.893967
Target:  5'- cCAAgggGGGCGCcgguggCgGGGGCGGCGGcGAa -3'
miRNA:   3'- aGUUa--CUCGCGa-----GgCUCCGCCGUU-CU- -5'
13938 3' -55.7 NC_003521.1 + 66808 0.68 0.900334
Target:  5'- gUCGGUGaAGCGCgUCuUGAGGuCGGCGAu- -3'
miRNA:   3'- -AGUUAC-UCGCG-AG-GCUCC-GCCGUUcu -5'
13938 3' -55.7 NC_003521.1 + 73630 0.67 0.923555
Target:  5'- aCGAUGAGCGUgcugagggCCGuGcGCGGCGc-- -3'
miRNA:   3'- aGUUACUCGCGa-------GGCuC-CGCCGUucu -5'
13938 3' -55.7 NC_003521.1 + 90786 0.66 0.959104
Target:  5'- gUUAGUGGGCGUaCCuAGGgGGCGuGAc -3'
miRNA:   3'- -AGUUACUCGCGaGGcUCCgCCGUuCU- -5'
13938 3' -55.7 NC_003521.1 + 91937 0.67 0.943128
Target:  5'- gCGGUGgacccGGCgGCggaccCCGuGGCGGCGAGGg -3'
miRNA:   3'- aGUUAC-----UCG-CGa----GGCuCCGCCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 102338 0.72 0.708569
Target:  5'- --cGUGGGCGCcgacgCCGGGGUGGCGgcAGGc -3'
miRNA:   3'- aguUACUCGCGa----GGCUCCGCCGU--UCU- -5'
13938 3' -55.7 NC_003521.1 + 102787 0.66 0.965487
Target:  5'- gCGAUGAcGCGCcggcggCCGccagcucGGGCGGCAGc- -3'
miRNA:   3'- aGUUACU-CGCGa-----GGC-------UCCGCCGUUcu -5'
13938 3' -55.7 NC_003521.1 + 103171 0.66 0.959104
Target:  5'- cCAuUGAGCGCUCCcugucGGGCGuGCu--- -3'
miRNA:   3'- aGUuACUCGCGAGGc----UCCGC-CGuucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.