miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 3' -55.7 NC_003521.1 + 240737 0.67 0.943128
Target:  5'- --cGUGAGCuGC-CgGAGGCGGCGc-- -3'
miRNA:   3'- aguUACUCG-CGaGgCUCCGCCGUucu -5'
13938 3' -55.7 NC_003521.1 + 238424 0.68 0.912397
Target:  5'- cCAGUGcuCGCggUCGAGGUcgGGCAGGAg -3'
miRNA:   3'- aGUUACucGCGa-GGCUCCG--CCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 235941 0.66 0.961884
Target:  5'- uUCGGggucgGGGgGUUCauagauacgaaaGGGGCGGCGAGGg -3'
miRNA:   3'- -AGUUa----CUCgCGAGg-----------CUCCGCCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 227111 0.66 0.965802
Target:  5'- -uGAUGGGCcuGC-CCGGcgcGGCGGCGGGc -3'
miRNA:   3'- agUUACUCG--CGaGGCU---CCGCCGUUCu -5'
13938 3' -55.7 NC_003521.1 + 216119 0.66 0.955439
Target:  5'- ---uUGAGCGCggcgCgGAGGCcgcGGCAgaGGAa -3'
miRNA:   3'- aguuACUCGCGa---GgCUCCG---CCGU--UCU- -5'
13938 3' -55.7 NC_003521.1 + 215631 0.68 0.900334
Target:  5'- gUCGGUGAGgacgggGCUCCGcauGGucGCGGCGGGAg -3'
miRNA:   3'- -AGUUACUCg-----CGAGGC---UC--CGCCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 211982 0.66 0.965802
Target:  5'- cCAGUGcGUGaUCCGccacGGCGGCAAGc -3'
miRNA:   3'- aGUUACuCGCgAGGCu---CCGCCGUUCu -5'
13938 3' -55.7 NC_003521.1 + 203711 0.67 0.923555
Target:  5'- gCGAcUGcGGUGUU-CGAGGCGGCGGGGg -3'
miRNA:   3'- aGUU-AC-UCGCGAgGCUCCGCCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 202892 0.68 0.912397
Target:  5'- cCAGUGcuCGCggUCGAGGUcgGGCAGGAg -3'
miRNA:   3'- aGUUACucGCGa-GGCUCCG--CCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 192347 0.69 0.866346
Target:  5'- -aGAUGGGUGCUCgGugcucgcacGGGCGGCGuuGGGg -3'
miRNA:   3'- agUUACUCGCGAGgC---------UCCGCCGU--UCU- -5'
13938 3' -55.7 NC_003521.1 + 191671 0.74 0.629047
Target:  5'- gCGAUGAG-GUcgCCGAGGaCGGCGAGGc -3'
miRNA:   3'- aGUUACUCgCGa-GGCUCC-GCCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 186533 0.7 0.843499
Target:  5'- cCAGcGGGgGCUCCGuGGgaGGCAGGGc -3'
miRNA:   3'- aGUUaCUCgCGAGGCuCCg-CCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 168466 0.66 0.954297
Target:  5'- ----gGGGCGCUgguggcuggucaggUCGAucaugGGCGGCGAGAc -3'
miRNA:   3'- aguuaCUCGCGA--------------GGCU-----CCGCCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 163757 0.67 0.938576
Target:  5'- aCAGcG-GCGCUCaCGGcGGCGGCAAc- -3'
miRNA:   3'- aGUUaCuCGCGAG-GCU-CCGCCGUUcu -5'
13938 3' -55.7 NC_003521.1 + 154303 0.71 0.747104
Target:  5'- --uAUGGGCGC-CUGccGCGGCAAGAg -3'
miRNA:   3'- aguUACUCGCGaGGCucCGCCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 153768 0.66 0.962557
Target:  5'- gCAGcGAGCGCcUgGAGGCgcagcugcgcGGCAAGGg -3'
miRNA:   3'- aGUUaCUCGCGaGgCUCCG----------CCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 146818 0.69 0.858172
Target:  5'- aCGAcGAGCGCUCCGccugucuGGGgGGCGc-- -3'
miRNA:   3'- aGUUaCUCGCGAGGC-------UCCgCCGUucu -5'
13938 3' -55.7 NC_003521.1 + 142489 0.68 0.91809
Target:  5'- ----cGAGCGCagcgaCGAGGCcauGGCGAGGa -3'
miRNA:   3'- aguuaCUCGCGag---GCUCCG---CCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 135390 0.72 0.718317
Target:  5'- ----cGGGCGCcaaaccgugCCGAGGCGgGCGGGAa -3'
miRNA:   3'- aguuaCUCGCGa--------GGCUCCGC-CGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 134892 0.69 0.851307
Target:  5'- ----cGAGaGCUCCGAGGUGGCc--- -3'
miRNA:   3'- aguuaCUCgCGAGGCUCCGCCGuucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.