Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13938 | 3' | -55.7 | NC_003521.1 | + | 105026 | 0.71 | 0.747104 |
Target: 5'- aCGG-GAGCGCUUCGAGGaCGGCc--- -3' miRNA: 3'- aGUUaCUCGCGAGGCUCC-GCCGuucu -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 105857 | 0.66 | 0.965802 |
Target: 5'- ---cUGAGCgGCUgcgCCGGcGGCGGCGAcGAc -3' miRNA: 3'- aguuACUCG-CGA---GGCU-CCGCCGUU-CU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 113055 | 0.67 | 0.928791 |
Target: 5'- ----aGAGCGCgugcCCGuAGGCGGCcAGc -3' miRNA: 3'- aguuaCUCGCGa---GGC-UCCGCCGuUCu -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 113171 | 0.66 | 0.959104 |
Target: 5'- -gAcgGGGCcCUCCcAGGCGGCGAu- -3' miRNA: 3'- agUuaCUCGcGAGGcUCCGCCGUUcu -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 114375 | 0.78 | 0.394769 |
Target: 5'- cCGGUGAGCagaUCCGAGGCGGCGcGGu -3' miRNA: 3'- aGUUACUCGcg-AGGCUCCGCCGUuCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 114790 | 0.71 | 0.775023 |
Target: 5'- aUCGAUG-GUGC-CCGuGGCGGCGguGGGc -3' miRNA: 3'- -AGUUACuCGCGaGGCuCCGCCGU--UCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 116879 | 0.66 | 0.965802 |
Target: 5'- gCAGUG-GCGCggCUGcGGCGGCGc-- -3' miRNA: 3'- aGUUACuCGCGa-GGCuCCGCCGUucu -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 117046 | 0.71 | 0.775023 |
Target: 5'- cCAGUGuuuCGC-CCGAGGCGGCcgcGGAg -3' miRNA: 3'- aGUUACuc-GCGaGGCUCCGCCGu--UCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 117733 | 0.68 | 0.91809 |
Target: 5'- gUCGccGGGUGUggagGAGGCGGCGGGGg -3' miRNA: 3'- -AGUuaCUCGCGagg-CUCCGCCGUUCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 130416 | 0.68 | 0.906478 |
Target: 5'- cCAggGcguAGCGCUCgGuGGCGGCAGc- -3' miRNA: 3'- aGUuaC---UCGCGAGgCuCCGCCGUUcu -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 134892 | 0.69 | 0.851307 |
Target: 5'- ----cGAGaGCUCCGAGGUGGCc--- -3' miRNA: 3'- aguuaCUCgCGAGGCUCCGCCGuucu -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 135390 | 0.72 | 0.718317 |
Target: 5'- ----cGGGCGCcaaaccgugCCGAGGCGgGCGGGAa -3' miRNA: 3'- aguuaCUCGCGa--------GGCUCCGC-CGUUCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 142489 | 0.68 | 0.91809 |
Target: 5'- ----cGAGCGCagcgaCGAGGCcauGGCGAGGa -3' miRNA: 3'- aguuaCUCGCGag---GCUCCG---CCGUUCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 146818 | 0.69 | 0.858172 |
Target: 5'- aCGAcGAGCGCUCCGccugucuGGGgGGCGc-- -3' miRNA: 3'- aGUUaCUCGCGAGGC-------UCCgCCGUucu -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 153768 | 0.66 | 0.962557 |
Target: 5'- gCAGcGAGCGCcUgGAGGCgcagcugcgcGGCAAGGg -3' miRNA: 3'- aGUUaCUCGCGaGgCUCCG----------CCGUUCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 154303 | 0.71 | 0.747104 |
Target: 5'- --uAUGGGCGC-CUGccGCGGCAAGAg -3' miRNA: 3'- aguUACUCGCGaGGCucCGCCGUUCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 163757 | 0.67 | 0.938576 |
Target: 5'- aCAGcG-GCGCUCaCGGcGGCGGCAAc- -3' miRNA: 3'- aGUUaCuCGCGAG-GCU-CCGCCGUUcu -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 168466 | 0.66 | 0.954297 |
Target: 5'- ----gGGGCGCUgguggcuggucaggUCGAucaugGGCGGCGAGAc -3' miRNA: 3'- aguuaCUCGCGA--------------GGCU-----CCGCCGUUCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 186533 | 0.7 | 0.843499 |
Target: 5'- cCAGcGGGgGCUCCGuGGgaGGCAGGGc -3' miRNA: 3'- aGUUaCUCgCGAGGCuCCg-CCGUUCU- -5' |
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13938 | 3' | -55.7 | NC_003521.1 | + | 191671 | 0.74 | 0.629047 |
Target: 5'- gCGAUGAG-GUcgCCGAGGaCGGCGAGGc -3' miRNA: 3'- aGUUACUCgCGa-GGCUCC-GCCGUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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