miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 3' -55.7 NC_003521.1 + 6687 0.97 0.026915
Target:  5'- gUCAAUGAGCGUcCCGAGGCGGCAAGAc -3'
miRNA:   3'- -AGUUACUCGCGaGGCUCCGCCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 113055 0.67 0.928791
Target:  5'- ----aGAGCGCgugcCCGuAGGCGGCcAGc -3'
miRNA:   3'- aguuaCUCGCGa---GGC-UCCGCCGuUCu -5'
13938 3' -55.7 NC_003521.1 + 113171 0.66 0.959104
Target:  5'- -gAcgGGGCcCUCCcAGGCGGCGAu- -3'
miRNA:   3'- agUuaCUCGcGAGGcUCCGCCGUUcu -5'
13938 3' -55.7 NC_003521.1 + 105857 0.66 0.965802
Target:  5'- ---cUGAGCgGCUgcgCCGGcGGCGGCGAcGAc -3'
miRNA:   3'- aguuACUCG-CGA---GGCU-CCGCCGUU-CU- -5'
13938 3' -55.7 NC_003521.1 + 4615 0.71 0.793038
Target:  5'- gCGAUGAGCGaaCCGccGGCGGCGGu- -3'
miRNA:   3'- aGUUACUCGCgaGGCu-CCGCCGUUcu -5'
13938 3' -55.7 NC_003521.1 + 17168 0.7 0.835507
Target:  5'- aCGGUGAuuggagGCGCggCCGAGGgGGuCGAGGc -3'
miRNA:   3'- aGUUACU------CGCGa-GGCUCCgCC-GUUCU- -5'
13938 3' -55.7 NC_003521.1 + 53847 0.68 0.893967
Target:  5'- -aAGUGA--GCUUCGAGGCGGCcccGGGAg -3'
miRNA:   3'- agUUACUcgCGAGGCUCCGCCG---UUCU- -5'
13938 3' -55.7 NC_003521.1 + 54171 0.68 0.893967
Target:  5'- cCAAgggGGGCGCcgguggCgGGGGCGGCGGcGAa -3'
miRNA:   3'- aGUUa--CUCGCGa-----GgCUCCGCCGUU-CU- -5'
13938 3' -55.7 NC_003521.1 + 202892 0.68 0.912397
Target:  5'- cCAGUGcuCGCggUCGAGGUcgGGCAGGAg -3'
miRNA:   3'- aGUUACucGCGa-GGCUCCG--CCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 73630 0.67 0.923555
Target:  5'- aCGAUGAGCGUgcugagggCCGuGcGCGGCGc-- -3'
miRNA:   3'- aGUUACUCGCGa-------GGCuC-CGCCGUucu -5'
13938 3' -55.7 NC_003521.1 + 142489 0.68 0.91809
Target:  5'- ----cGAGCGCagcgaCGAGGCcauGGCGAGGa -3'
miRNA:   3'- aguuaCUCGCGag---GCUCCG---CCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 130416 0.68 0.906478
Target:  5'- cCAggGcguAGCGCUCgGuGGCGGCAGc- -3'
miRNA:   3'- aGUuaC---UCGCGAGgCuCCGCCGUUcu -5'
13938 3' -55.7 NC_003521.1 + 114375 0.78 0.394769
Target:  5'- cCGGUGAGCagaUCCGAGGCGGCGcGGu -3'
miRNA:   3'- aGUUACUCGcg-AGGCUCCGCCGUuCU- -5'
13938 3' -55.7 NC_003521.1 + 117733 0.68 0.91809
Target:  5'- gUCGccGGGUGUggagGAGGCGGCGGGGg -3'
miRNA:   3'- -AGUuaCUCGCGagg-CUCCGCCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 154303 0.71 0.747104
Target:  5'- --uAUGGGCGC-CUGccGCGGCAAGAg -3'
miRNA:   3'- aguUACUCGCGaGGCucCGCCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 66808 0.68 0.900334
Target:  5'- gUCGGUGaAGCGCgUCuUGAGGuCGGCGAu- -3'
miRNA:   3'- -AGUUAC-UCGCG-AG-GCUCC-GCCGUUcu -5'
13938 3' -55.7 NC_003521.1 + 203711 0.67 0.923555
Target:  5'- gCGAcUGcGGUGUU-CGAGGCGGCGGGGg -3'
miRNA:   3'- aGUU-AC-UCGCGAgGCUCCGCCGUUCU- -5'
13938 3' -55.7 NC_003521.1 + 240737 0.67 0.943128
Target:  5'- --cGUGAGCuGC-CgGAGGCGGCGc-- -3'
miRNA:   3'- aguUACUCG-CGaGgCUCCGCCGUucu -5'
13938 3' -55.7 NC_003521.1 + 114790 0.71 0.775023
Target:  5'- aUCGAUG-GUGC-CCGuGGCGGCGguGGGc -3'
miRNA:   3'- -AGUUACuCGCGaGGCuCCGCCGU--UCU- -5'
13938 3' -55.7 NC_003521.1 + 134892 0.69 0.851307
Target:  5'- ----cGAGaGCUCCGAGGUGGCc--- -3'
miRNA:   3'- aguuaCUCgCGAGGCUCCGCCGuucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.