miRNA display CGI


Results 41 - 60 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 73140 0.72 0.33288
Target:  5'- gGCgGgGGcAGCggcgGCGGCGCCgCCUCg -3'
miRNA:   3'- gCGgCgCCaUCGa---CGCCGCGG-GGAGg -5'
13938 5' -64.4 NC_003521.1 + 119050 0.72 0.339806
Target:  5'- gCGUCGgGGU-GCUG-GaGCGCUCCUCCu -3'
miRNA:   3'- -GCGGCgCCAuCGACgC-CGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 152355 0.72 0.339806
Target:  5'- aCGCUGCucuGGggccGGCcgggGCGGCGCgCCCUCUa -3'
miRNA:   3'- -GCGGCG---CCa---UCGa---CGCCGCG-GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 223838 0.72 0.339806
Target:  5'- gCGCCugcugucccuGCGGcugcuGCUGCGGCuGUCCCUCg -3'
miRNA:   3'- -GCGG----------CGCCau---CGACGCCG-CGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 217098 0.72 0.346129
Target:  5'- cCGCCGCGG--GCUGCGaccuccuGCGCgCCaUCCg -3'
miRNA:   3'- -GCGGCGCCauCGACGC-------CGCGgGG-AGG- -5'
13938 5' -64.4 NC_003521.1 + 105340 0.72 0.346836
Target:  5'- uGCgGUGGUGGCgGCGGUgggaucGCCCCUg- -3'
miRNA:   3'- gCGgCGCCAUCGaCGCCG------CGGGGAgg -5'
13938 5' -64.4 NC_003521.1 + 142609 0.72 0.346836
Target:  5'- gGCCGCGGcGGCcgugGCGGCGgCCUCgcgcacCCa -3'
miRNA:   3'- gCGGCGCCaUCGa---CGCCGC-GGGGa-----GG- -5'
13938 5' -64.4 NC_003521.1 + 43440 0.72 0.353252
Target:  5'- gGUCGCGGUGGCgcucgUGCGGCagcagcGCCaccagcgcgugcaCCUCCa -3'
miRNA:   3'- gCGGCGCCAUCG-----ACGCCG------CGG-------------GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 45803 0.72 0.353969
Target:  5'- uCGCCGCc---GCUGacggGGCGCCCgCUCCa -3'
miRNA:   3'- -GCGGCGccauCGACg---CCGCGGG-GAGG- -5'
13938 5' -64.4 NC_003521.1 + 116974 0.71 0.367806
Target:  5'- cCGCCGUGGaAGUgGaCGGCGCUuccgaggCCUCCa -3'
miRNA:   3'- -GCGGCGCCaUCGaC-GCCGCGG-------GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 56724 0.71 0.368545
Target:  5'- gGCCGUGGc----GCGGCGCCUCUCg -3'
miRNA:   3'- gCGGCGCCaucgaCGCCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 180929 0.71 0.375985
Target:  5'- gGCCGCucgauGGUGGC-GCGGUGCCgUagUCCg -3'
miRNA:   3'- gCGGCG-----CCAUCGaCGCCGCGGgG--AGG- -5'
13938 5' -64.4 NC_003521.1 + 191079 0.71 0.375985
Target:  5'- gCGaCCGUGGUGGCgGCGGCGggcugcguCUCgUCCa -3'
miRNA:   3'- -GC-GGCGCCAUCGaCGCCGC--------GGGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 210001 0.71 0.375985
Target:  5'- gGCUGCcGUGGCUGCcgcuGCGCacgaCCUCCu -3'
miRNA:   3'- gCGGCGcCAUCGACGc---CGCGg---GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 222870 0.71 0.38657
Target:  5'- gGCCGCGGaguuccgcgAGCUGCGcguuuucauccgccaGCGCCUCUgCu -3'
miRNA:   3'- gCGGCGCCa--------UCGACGC---------------CGCGGGGAgG- -5'
13938 5' -64.4 NC_003521.1 + 133499 0.71 0.391167
Target:  5'- gCGCCGCu---GCUGCGGgGCCCaacCCg -3'
miRNA:   3'- -GCGGCGccauCGACGCCgCGGGga-GG- -5'
13938 5' -64.4 NC_003521.1 + 43486 0.71 0.391167
Target:  5'- gGCCGUGcUGGCcGCGGCGgCCaacaUCCg -3'
miRNA:   3'- gCGGCGCcAUCGaCGCCGCgGGg---AGG- -5'
13938 5' -64.4 NC_003521.1 + 74581 0.71 0.391167
Target:  5'- aCGgaGCGGcGGC-GCGGCGUCCCgcggCCg -3'
miRNA:   3'- -GCggCGCCaUCGaCGCCGCGGGGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 149970 0.71 0.398128
Target:  5'- gGCCGUGGUcagcagcAGCacggGCGGCGCgcaCCCgCCg -3'
miRNA:   3'- gCGGCGCCA-------UCGa---CGCCGCG---GGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 43843 0.71 0.398906
Target:  5'- gGCCGCGGgcccGUcacaGGCGCCCCggCCg -3'
miRNA:   3'- gCGGCGCCau--CGacg-CCGCGGGGa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.