miRNA display CGI


Results 21 - 40 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 223838 0.72 0.339806
Target:  5'- gCGCCugcugucccuGCGGcugcuGCUGCGGCuGUCCCUCg -3'
miRNA:   3'- -GCGG----------CGCCau---CGACGCCG-CGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 223367 0.69 0.49885
Target:  5'- gGCCuuGGUcagcAGCgacaucGCGGCGCCCCgacgcgggCCg -3'
miRNA:   3'- gCGGcgCCA----UCGa-----CGCCGCGGGGa-------GG- -5'
13938 5' -64.4 NC_003521.1 + 222870 0.71 0.38657
Target:  5'- gGCCGCGGaguuccgcgAGCUGCGcguuuucauccgccaGCGCCUCUgCu -3'
miRNA:   3'- gCGGCGCCa--------UCGACGC---------------CGCGGGGAgG- -5'
13938 5' -64.4 NC_003521.1 + 222325 0.66 0.636535
Target:  5'- aGCgUGUGGUGGCacacgGGCaGCUCCUCCa -3'
miRNA:   3'- gCG-GCGCCAUCGacg--CCG-CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 222185 0.74 0.26356
Target:  5'- gCGCCGCGGcAGCcccgaaggGUGGCGCCgCgcgCCg -3'
miRNA:   3'- -GCGGCGCCaUCGa-------CGCCGCGGgGa--GG- -5'
13938 5' -64.4 NC_003521.1 + 221910 0.7 0.427563
Target:  5'- gGCgCGCGGcgccacccuucggGGCUgccGCGGCGCCUCgUCCu -3'
miRNA:   3'- gCG-GCGCCa------------UCGA---CGCCGCGGGG-AGG- -5'
13938 5' -64.4 NC_003521.1 + 221237 0.69 0.49885
Target:  5'- cCGCgaCGUGG-AGCUGCaGCGCuCCCUgCu -3'
miRNA:   3'- -GCG--GCGCCaUCGACGcCGCG-GGGAgG- -5'
13938 5' -64.4 NC_003521.1 + 220340 0.68 0.525586
Target:  5'- aGCUGCGuGUAcgcGCUGCuGGUGCuguCCUUCCu -3'
miRNA:   3'- gCGGCGC-CAU---CGACG-CCGCG---GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 219434 0.68 0.562028
Target:  5'- aGCCGCcacuGGaacacGCUGCGGCGCcugcugguaCCCUgCCu -3'
miRNA:   3'- gCGGCG----CCau---CGACGCCGCG---------GGGA-GG- -5'
13938 5' -64.4 NC_003521.1 + 218630 0.76 0.201804
Target:  5'- gCGCgGCGGUaagcggccacGGCcgGCGGCGCCUCgUCCc -3'
miRNA:   3'- -GCGgCGCCA----------UCGa-CGCCGCGGGG-AGG- -5'
13938 5' -64.4 NC_003521.1 + 217098 0.72 0.346129
Target:  5'- cCGCCGCGG--GCUGCGaccuccuGCGCgCCaUCCg -3'
miRNA:   3'- -GCGGCGCCauCGACGC-------CGCGgGG-AGG- -5'
13938 5' -64.4 NC_003521.1 + 216673 0.69 0.496209
Target:  5'- -uCCGCGGUGGUcGCGGCgacGUuauaggcacgaacgCCCUCCg -3'
miRNA:   3'- gcGGCGCCAUCGaCGCCG---CG--------------GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 215906 0.69 0.49885
Target:  5'- cCGCCGCGacca-UGCGGaGCCCCgUCCu -3'
miRNA:   3'- -GCGGCGCcaucgACGCCgCGGGG-AGG- -5'
13938 5' -64.4 NC_003521.1 + 215550 0.69 0.481367
Target:  5'- cCGCUgGCGGUGGcCUGCcucugcaucuCGCCCUUCCa -3'
miRNA:   3'- -GCGG-CGCCAUC-GACGcc--------GCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 215444 0.66 0.655249
Target:  5'- aGCCGCGGg---UGCuGGCGCCaggCCg -3'
miRNA:   3'- gCGGCGCCaucgACG-CCGCGGggaGG- -5'
13938 5' -64.4 NC_003521.1 + 211833 0.67 0.627171
Target:  5'- cCGCCGCG--AGCgUGCGGCGCUaCUg- -3'
miRNA:   3'- -GCGGCGCcaUCG-ACGCCGCGGgGAgg -5'
13938 5' -64.4 NC_003521.1 + 210001 0.71 0.375985
Target:  5'- gGCUGCcGUGGCUGCcgcuGCGCacgaCCUCCu -3'
miRNA:   3'- gCGGCGcCAUCGACGc---CGCGg---GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 209209 0.68 0.571252
Target:  5'- gGCCGCGGUGGCccUGCcaGCugaCCCUgCCg -3'
miRNA:   3'- gCGGCGCCAUCG--ACGc-CGcg-GGGA-GG- -5'
13938 5' -64.4 NC_003521.1 + 204649 0.69 0.472737
Target:  5'- gGCCGCGGagacgAGUUGCGcuCGCUCCUgggCCg -3'
miRNA:   3'- gCGGCGCCa----UCGACGCc-GCGGGGA---GG- -5'
13938 5' -64.4 NC_003521.1 + 204369 0.69 0.467597
Target:  5'- uCGUCGCGGcccAGgaGCGaGCGCaacucgucuccgcggCCCUCCg -3'
miRNA:   3'- -GCGGCGCCa--UCgaCGC-CGCG---------------GGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.