miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13939 5' -48 NC_003521.1 + 184431 0.66 0.999978
Target:  5'- --cGACGCCGcagguaguguugUCGuCGCUCgcccaugCACGAUCa -3'
miRNA:   3'- guuUUGUGGC------------AGU-GUGAGa------GUGCUAG- -5'
13939 5' -48 NC_003521.1 + 105193 0.66 0.999978
Target:  5'- --cGACGgCGUCGCGCUCgucgUCAUcGUCg -3'
miRNA:   3'- guuUUGUgGCAGUGUGAG----AGUGcUAG- -5'
13939 5' -48 NC_003521.1 + 160507 0.66 0.999978
Target:  5'- aGAAGCGCgCG-CGC-CUUUCACGAg- -3'
miRNA:   3'- gUUUUGUG-GCaGUGuGAGAGUGCUag -5'
13939 5' -48 NC_003521.1 + 13540 0.66 0.999978
Target:  5'- gAAGACGCCGUCACccaccauacaGCUacacaGCGAUa -3'
miRNA:   3'- gUUUUGUGGCAGUG----------UGAgag--UGCUAg -5'
13939 5' -48 NC_003521.1 + 55382 0.66 0.999978
Target:  5'- aAGAGCGgCGUCACGCaauggUC-CACGAa- -3'
miRNA:   3'- gUUUUGUgGCAGUGUG-----AGaGUGCUag -5'
13939 5' -48 NC_003521.1 + 167821 0.66 0.999977
Target:  5'- -cGAGCGCCGUCAUuaccgacacguccGCUCuaUCGCcGUCu -3'
miRNA:   3'- guUUUGUGGCAGUG-------------UGAG--AGUGcUAG- -5'
13939 5' -48 NC_003521.1 + 12984 0.66 0.99997
Target:  5'- aUAGAACauACCGUUggcaACGCUCgcguuaccCGCGGUCg -3'
miRNA:   3'- -GUUUUG--UGGCAG----UGUGAGa-------GUGCUAG- -5'
13939 5' -48 NC_003521.1 + 74948 0.66 0.99997
Target:  5'- ----cCGCCGUCGCuGCUgCUUGCGGUa -3'
miRNA:   3'- guuuuGUGGCAGUG-UGA-GAGUGCUAg -5'
13939 5' -48 NC_003521.1 + 148035 0.66 0.99997
Target:  5'- aGGAAgGCCGUCAgGCUgUCGCc--- -3'
miRNA:   3'- gUUUUgUGGCAGUgUGAgAGUGcuag -5'
13939 5' -48 NC_003521.1 + 178545 0.66 0.99997
Target:  5'- -cGAAC-CCGUCcCGCUCguUCGCGcgCg -3'
miRNA:   3'- guUUUGuGGCAGuGUGAG--AGUGCuaG- -5'
13939 5' -48 NC_003521.1 + 69672 0.66 0.999964
Target:  5'- ---cGCGCCGUCACcgucccgcgucugcuGCgUCUCACGuggCa -3'
miRNA:   3'- guuuUGUGGCAGUG---------------UG-AGAGUGCua-G- -5'
13939 5' -48 NC_003521.1 + 142202 0.66 0.99996
Target:  5'- -uGGGCGCCcaCGCGCUg-CACGGUCa -3'
miRNA:   3'- guUUUGUGGcaGUGUGAgaGUGCUAG- -5'
13939 5' -48 NC_003521.1 + 223949 0.66 0.99996
Target:  5'- cCAGAugGCCG-UACACUUcgauguaGCGGUCg -3'
miRNA:   3'- -GUUUugUGGCaGUGUGAGag-----UGCUAG- -5'
13939 5' -48 NC_003521.1 + 6593 0.66 0.99996
Target:  5'- --uGGCGCgCGUUAuccuCAgUCUCAUGAUCa -3'
miRNA:   3'- guuUUGUG-GCAGU----GUgAGAGUGCUAG- -5'
13939 5' -48 NC_003521.1 + 208019 0.66 0.99996
Target:  5'- gGAGACAUCGUCACGCcuaUCAUa--- -3'
miRNA:   3'- gUUUUGUGGCAGUGUGag-AGUGcuag -5'
13939 5' -48 NC_003521.1 + 227338 0.66 0.99996
Target:  5'- -----gACCGUCAuCugUCUCgacuGCGGUCc -3'
miRNA:   3'- guuuugUGGCAGU-GugAGAG----UGCUAG- -5'
13939 5' -48 NC_003521.1 + 19807 0.66 0.99996
Target:  5'- -cGAGCGCCGUCGCAgUUCUgGCcuccuAUCg -3'
miRNA:   3'- guUUUGUGGCAGUGU-GAGAgUGc----UAG- -5'
13939 5' -48 NC_003521.1 + 89576 0.66 0.999959
Target:  5'- cCGAAACGCCGUUuauCGC-CUCgccaaaccgcgaaACGGUCc -3'
miRNA:   3'- -GUUUUGUGGCAGu--GUGaGAG-------------UGCUAG- -5'
13939 5' -48 NC_003521.1 + 162289 0.66 0.999947
Target:  5'- ---uGCACCGUCACGCcgggagUC-CGCGGa- -3'
miRNA:   3'- guuuUGUGGCAGUGUG------AGaGUGCUag -5'
13939 5' -48 NC_003521.1 + 221270 0.66 0.999947
Target:  5'- gCAGAA-GCCGcaCACGCUCaUCAgGAUCa -3'
miRNA:   3'- -GUUUUgUGGCa-GUGUGAG-AGUgCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.