miRNA display CGI


Results 21 - 40 of 83 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13939 5' -48 NC_003521.1 + 221270 0.66 0.999947
Target:  5'- gCAGAA-GCCGcaCACGCUCaUCAgGAUCa -3'
miRNA:   3'- -GUUUUgUGGCa-GUGUGAG-AGUgCUAG- -5'
13939 5' -48 NC_003521.1 + 82890 0.66 0.99993
Target:  5'- --cGGCACCcgcuguuggcgcGUCGcCACUCUCAucCGGUCu -3'
miRNA:   3'- guuUUGUGG------------CAGU-GUGAGAGU--GCUAG- -5'
13939 5' -48 NC_003521.1 + 126686 0.66 0.99993
Target:  5'- aAGGGCACCGcCAggcagUACUCgacCAUGAUCu -3'
miRNA:   3'- gUUUUGUGGCaGU-----GUGAGa--GUGCUAG- -5'
13939 5' -48 NC_003521.1 + 127550 0.67 0.999908
Target:  5'- gCAGcACGCCGUCGgccaggUGCUCg-GCGAUCa -3'
miRNA:   3'- -GUUuUGUGGCAGU------GUGAGagUGCUAG- -5'
13939 5' -48 NC_003521.1 + 24678 0.67 0.999908
Target:  5'- ---uGCGCCGUCugGCUUUCuAUGcUCc -3'
miRNA:   3'- guuuUGUGGCAGugUGAGAG-UGCuAG- -5'
13939 5' -48 NC_003521.1 + 160113 0.67 0.999908
Target:  5'- aGAAGCaACCGUUACGCUCgCGCc--- -3'
miRNA:   3'- gUUUUG-UGGCAGUGUGAGaGUGcuag -5'
13939 5' -48 NC_003521.1 + 176710 0.67 0.999908
Target:  5'- uGGAGcCACCGUcCACGCUgUUugGAg- -3'
miRNA:   3'- gUUUU-GUGGCA-GUGUGAgAGugCUag -5'
13939 5' -48 NC_003521.1 + 237110 0.67 0.999908
Target:  5'- cCGGGGCACCGUCAgCGCggaggUCUggCGCGAg- -3'
miRNA:   3'- -GUUUUGUGGCAGU-GUG-----AGA--GUGCUag -5'
13939 5' -48 NC_003521.1 + 57164 0.67 0.999881
Target:  5'- --cGGCGCUGUCGCgacggccaGCUCUCGCuuUCc -3'
miRNA:   3'- guuUUGUGGCAGUG--------UGAGAGUGcuAG- -5'
13939 5' -48 NC_003521.1 + 42447 0.67 0.999881
Target:  5'- gGAAACGCCGU-GCugUCUgCACGugguuuUCg -3'
miRNA:   3'- gUUUUGUGGCAgUGugAGA-GUGCu-----AG- -5'
13939 5' -48 NC_003521.1 + 53366 0.67 0.999881
Target:  5'- --cAGCACCGUCcCGCUgaCGCGGc- -3'
miRNA:   3'- guuUUGUGGCAGuGUGAgaGUGCUag -5'
13939 5' -48 NC_003521.1 + 192694 0.67 0.999881
Target:  5'- aCGGAgguGCACagguCGUCGCGCUCguccCGCGAUa -3'
miRNA:   3'- -GUUU---UGUG----GCAGUGUGAGa---GUGCUAg -5'
13939 5' -48 NC_003521.1 + 215683 0.67 0.999861
Target:  5'- cCAGAACGCCGUaC-CGC-CUCcuauauaccgagaagGCGAUCa -3'
miRNA:   3'- -GUUUUGUGGCA-GuGUGaGAG---------------UGCUAG- -5'
13939 5' -48 NC_003521.1 + 151030 0.67 0.999847
Target:  5'- cCGGGACGCCGaCGCGCUC--GCGGa- -3'
miRNA:   3'- -GUUUUGUGGCaGUGUGAGagUGCUag -5'
13939 5' -48 NC_003521.1 + 96791 0.67 0.999847
Target:  5'- --cAGCAgCGgcgGCGCUCgggCACGAUCg -3'
miRNA:   3'- guuUUGUgGCag-UGUGAGa--GUGCUAG- -5'
13939 5' -48 NC_003521.1 + 240813 0.67 0.999803
Target:  5'- -cAAACACgCGcCACACUCgcugCGCGGa- -3'
miRNA:   3'- guUUUGUG-GCaGUGUGAGa---GUGCUag -5'
13939 5' -48 NC_003521.1 + 264 0.67 0.999803
Target:  5'- -cAAACACgCGcCACACUCgcugCGCGGa- -3'
miRNA:   3'- guUUUGUG-GCaGUGUGAGa---GUGCUag -5'
13939 5' -48 NC_003521.1 + 200502 0.67 0.999803
Target:  5'- -cAAACACgCGcCACACUCgcugCGCGGa- -3'
miRNA:   3'- guUUUGUG-GCaGUGUGAGa---GUGCUag -5'
13939 5' -48 NC_003521.1 + 62357 0.67 0.999803
Target:  5'- --cAGCACgGUgcaCGCGCUCUCGCGccccuUCa -3'
miRNA:   3'- guuUUGUGgCA---GUGUGAGAGUGCu----AG- -5'
13939 5' -48 NC_003521.1 + 149071 0.67 0.99975
Target:  5'- --cGACGCgGcCGCGCUCUCGCa--- -3'
miRNA:   3'- guuUUGUGgCaGUGUGAGAGUGcuag -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.