miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 3' -52.7 NC_003521.1 + 10853 1.13 0.005223
Target:  5'- gUGAUCGUAAGCCCCGUAGUGGAUGCCg -3'
miRNA:   3'- -ACUAGCAUUCGGGGCAUCACCUACGG- -5'
13941 3' -52.7 NC_003521.1 + 93438 0.66 0.991184
Target:  5'- cGAcCGUcGAGCCCCGgUAGagGGAcGUCg -3'
miRNA:   3'- aCUaGCA-UUCGGGGC-AUCa-CCUaCGG- -5'
13941 3' -52.7 NC_003521.1 + 19395 0.66 0.993257
Target:  5'- ---cCGUGGGUCUCGUugccgagcacgcAGUGGuacGUGCCg -3'
miRNA:   3'- acuaGCAUUCGGGGCA------------UCACC---UACGG- -5'
13941 3' -52.7 NC_003521.1 + 105115 0.66 0.994136
Target:  5'- gGGUCGUGAucucGCCCagCGUGucgGGggGCCg -3'
miRNA:   3'- aCUAGCAUU----CGGG--GCAUca-CCuaCGG- -5'
13941 3' -52.7 NC_003521.1 + 89157 0.71 0.92426
Target:  5'- cUGcUCGUGGGCCUCacGGUGGAccacgauuuUGCCg -3'
miRNA:   3'- -ACuAGCAUUCGGGGcaUCACCU---------ACGG- -5'
13941 3' -52.7 NC_003521.1 + 221111 0.7 0.934561
Target:  5'- gUGAUCGUGAcCUCCGUGGUG--UGCg -3'
miRNA:   3'- -ACUAGCAUUcGGGGCAUCACcuACGg -5'
13941 3' -52.7 NC_003521.1 + 45755 0.69 0.969623
Target:  5'- cGA-CGUGuagaaGGCUgCCGUGGUGGuggGCCg -3'
miRNA:   3'- aCUaGCAU-----UCGG-GGCAUCACCua-CGG- -5'
13941 3' -52.7 NC_003521.1 + 77681 0.68 0.972449
Target:  5'- cGGcCGU-GGCCCCGUcGUcGGcUGCCg -3'
miRNA:   3'- aCUaGCAuUCGGGGCAuCA-CCuACGG- -5'
13941 3' -52.7 NC_003521.1 + 139250 0.67 0.983792
Target:  5'- aGGUgGcGGGCUCCGgguuGUGGAUGgCg -3'
miRNA:   3'- aCUAgCaUUCGGGGCau--CACCUACgG- -5'
13941 3' -52.7 NC_003521.1 + 204200 0.66 0.991184
Target:  5'- cGAgggCGUcAGGCagCCGUGGUGGAagagGCUu -3'
miRNA:   3'- aCUa--GCA-UUCGg-GGCAUCACCUa---CGG- -5'
13941 3' -52.7 NC_003521.1 + 44666 0.67 0.988067
Target:  5'- aGGUUGUAGGCCgUGagGGUGGAauaacgcaccucgGCCu -3'
miRNA:   3'- aCUAGCAUUCGGgGCa-UCACCUa------------CGG- -5'
13941 3' -52.7 NC_003521.1 + 79590 0.68 0.981871
Target:  5'- aGAcccUgGUGGGUCgCGUGGUGGG-GCCc -3'
miRNA:   3'- aCU---AgCAUUCGGgGCAUCACCUaCGG- -5'
13941 3' -52.7 NC_003521.1 + 117817 0.81 0.423907
Target:  5'- gGAUCGUAGGCUCCGaAGUGacGUGCCg -3'
miRNA:   3'- aCUAGCAUUCGGGGCaUCACc-UACGG- -5'
13941 3' -52.7 NC_003521.1 + 216491 0.67 0.989974
Target:  5'- cGcUCGUAGGCCUCGUcugcGUG--UGCCa -3'
miRNA:   3'- aCuAGCAUUCGGGGCAu---CACcuACGG- -5'
13941 3' -52.7 NC_003521.1 + 12848 0.76 0.696668
Target:  5'- cUGGUCGUGGuggguGCCgCCGUGGUGGucgguuugGCCa -3'
miRNA:   3'- -ACUAGCAUU-----CGG-GGCAUCACCua------CGG- -5'
13941 3' -52.7 NC_003521.1 + 166337 0.68 0.979783
Target:  5'- ---cCGcuauGGCCCUGcgggAGUGGAUGCUg -3'
miRNA:   3'- acuaGCau--UCGGGGCa---UCACCUACGG- -5'
13941 3' -52.7 NC_003521.1 + 235231 0.66 0.991184
Target:  5'- ---aCGUAGGCCUCGUugguccgcaGGcUGGA-GCCg -3'
miRNA:   3'- acuaGCAUUCGGGGCA---------UC-ACCUaCGG- -5'
13941 3' -52.7 NC_003521.1 + 143925 0.66 0.993164
Target:  5'- gUGGUCGUgguggaaGAGgUCCGU-GUGGAagcGCCg -3'
miRNA:   3'- -ACUAGCA-------UUCgGGGCAuCACCUa--CGG- -5'
13941 3' -52.7 NC_003521.1 + 236858 0.71 0.92426
Target:  5'- -uGUCG-GAGCCCCGaGGcUGGcUGCCg -3'
miRNA:   3'- acUAGCaUUCGGGGCaUC-ACCuACGG- -5'
13941 3' -52.7 NC_003521.1 + 222189 0.69 0.966597
Target:  5'- cGAggcgccgCGgcAGCCCCGaagGGUGGc-GCCg -3'
miRNA:   3'- aCUa------GCauUCGGGGCa--UCACCuaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.