miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 3' -52.7 NC_003521.1 + 102333 0.67 0.987168
Target:  5'- gUGcgCGUGGGCgCCGacgccggGGUGGcgGCa -3'
miRNA:   3'- -ACuaGCAUUCGgGGCa------UCACCuaCGg -5'
13941 3' -52.7 NC_003521.1 + 106606 0.69 0.966597
Target:  5'- gGAcCGUGAGCaUCGUGGgacGAUGCCa -3'
miRNA:   3'- aCUaGCAUUCGgGGCAUCac-CUACGG- -5'
13941 3' -52.7 NC_003521.1 + 101468 0.69 0.969623
Target:  5'- ---aCGUGcGCCUCGUAGUGGcgcgugagGUGCUc -3'
miRNA:   3'- acuaGCAUuCGGGGCAUCACC--------UACGG- -5'
13941 3' -52.7 NC_003521.1 + 77870 0.68 0.972449
Target:  5'- cGAUggCGccGGCCUCGUAGUGGAaGUUg -3'
miRNA:   3'- aCUA--GCauUCGGGGCAUCACCUaCGG- -5'
13941 3' -52.7 NC_003521.1 + 139379 0.68 0.975079
Target:  5'- aGAgcgcCGUGcucuuGGCCCCGcGGUGGucgAUGCUg -3'
miRNA:   3'- aCUa---GCAU-----UCGGGGCaUCACC---UACGG- -5'
13941 3' -52.7 NC_003521.1 + 101584 0.68 0.976808
Target:  5'- cGcgCGagGAGCCCCGUacaGGUGGuagcucaggacgucgGCCa -3'
miRNA:   3'- aCuaGCa-UUCGGGGCA---UCACCua-------------CGG- -5'
13941 3' -52.7 NC_003521.1 + 129375 0.68 0.979783
Target:  5'- aGAagGUGccgaagauGGCCUCGaAGUGGAUGUUg -3'
miRNA:   3'- aCUagCAU--------UCGGGGCaUCACCUACGG- -5'
13941 3' -52.7 NC_003521.1 + 135210 0.67 0.983792
Target:  5'- uUGAUgaaGUGGGCCUCGUccaccagcagcaGGUGGAaguucugGCCu -3'
miRNA:   3'- -ACUAg--CAUUCGGGGCA------------UCACCUa------CGG- -5'
13941 3' -52.7 NC_003521.1 + 92585 0.67 0.987168
Target:  5'- cGGUUGgcGGCUCCGgguUGGGUGUg -3'
miRNA:   3'- aCUAGCauUCGGGGCaucACCUACGg -5'
13941 3' -52.7 NC_003521.1 + 61785 0.69 0.959919
Target:  5'- ---cCGccGGCUCCGgcGUGGAUGCg -3'
miRNA:   3'- acuaGCauUCGGGGCauCACCUACGg -5'
13941 3' -52.7 NC_003521.1 + 2948 0.7 0.952374
Target:  5'- gGGUCGgcAGUCCaacguugcUGUAaUGGGUGCCa -3'
miRNA:   3'- aCUAGCauUCGGG--------GCAUcACCUACGG- -5'
13941 3' -52.7 NC_003521.1 + 46873 0.7 0.934562
Target:  5'- -cGUCGUGGGUCCagaaGgcgaAGUGGGUGUCg -3'
miRNA:   3'- acUAGCAUUCGGGg---Ca---UCACCUACGG- -5'
13941 3' -52.7 NC_003521.1 + 149674 0.74 0.790443
Target:  5'- cGAcaUCGUGGGCCCCGccgggaagcugaGGUGGA-GCCc -3'
miRNA:   3'- aCU--AGCAUUCGGGGCa-----------UCACCUaCGG- -5'
13941 3' -52.7 NC_003521.1 + 236693 0.74 0.809943
Target:  5'- cGGUUGUGgaacGGCCUCGUcuGGUugGGGUGCCu -3'
miRNA:   3'- aCUAGCAU----UCGGGGCA--UCA--CCUACGG- -5'
13941 3' -52.7 NC_003521.1 + 183972 0.74 0.818558
Target:  5'- cGG-CGUAGGCCCCGUAGUccgccuGAUagGCCg -3'
miRNA:   3'- aCUaGCAUUCGGGGCAUCAc-----CUA--CGG- -5'
13941 3' -52.7 NC_003521.1 + 18965 0.73 0.843377
Target:  5'- aGAUCGUucGUUCCcugGUGGUGGAcGCCc -3'
miRNA:   3'- aCUAGCAuuCGGGG---CAUCACCUaCGG- -5'
13941 3' -52.7 NC_003521.1 + 100219 0.72 0.873807
Target:  5'- aGGUCGUAGGCCggCGaGGUGGAgcugggcgaggUGCCc -3'
miRNA:   3'- aCUAGCAUUCGGg-GCaUCACCU-----------ACGG- -5'
13941 3' -52.7 NC_003521.1 + 56219 0.72 0.887771
Target:  5'- -cGUCGUAcuCCCCGaAGUGGcacgAUGCCa -3'
miRNA:   3'- acUAGCAUucGGGGCaUCACC----UACGG- -5'
13941 3' -52.7 NC_003521.1 + 33953 0.71 0.900852
Target:  5'- cGGUUGUGAaaaCUCCGUAGaccccaggGGAUGCCg -3'
miRNA:   3'- aCUAGCAUUc--GGGGCAUCa-------CCUACGG- -5'
13941 3' -52.7 NC_003521.1 + 119907 0.71 0.918757
Target:  5'- ----gGUGGGCCUgGaacaGGUGGAUGCCg -3'
miRNA:   3'- acuagCAUUCGGGgCa---UCACCUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.