miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 3' -52.7 NC_003521.1 + 100219 0.72 0.873807
Target:  5'- aGGUCGUAGGCCggCGaGGUGGAgcugggcgaggUGCCc -3'
miRNA:   3'- aCUAGCAUUCGGg-GCaUCACCU-----------ACGG- -5'
13941 3' -52.7 NC_003521.1 + 56219 0.72 0.887771
Target:  5'- -cGUCGUAcuCCCCGaAGUGGcacgAUGCCa -3'
miRNA:   3'- acUAGCAUucGGGGCaUCACC----UACGG- -5'
13941 3' -52.7 NC_003521.1 + 33953 0.71 0.900852
Target:  5'- cGGUUGUGAaaaCUCCGUAGaccccaggGGAUGCCg -3'
miRNA:   3'- aCUAGCAUUc--GGGGCAUCa-------CCUACGG- -5'
13941 3' -52.7 NC_003521.1 + 119907 0.71 0.918757
Target:  5'- ----gGUGGGCCUgGaacaGGUGGAUGCCg -3'
miRNA:   3'- acuagCAUUCGGGgCa---UCACCUACGG- -5'
13941 3' -52.7 NC_003521.1 + 46873 0.7 0.934562
Target:  5'- -cGUCGUGGGUCCagaaGgcgaAGUGGGUGUCg -3'
miRNA:   3'- acUAGCAUUCGGGg---Ca---UCACCUACGG- -5'
13941 3' -52.7 NC_003521.1 + 2948 0.7 0.952374
Target:  5'- gGGUCGgcAGUCCaacguugcUGUAaUGGGUGCCa -3'
miRNA:   3'- aCUAGCauUCGGG--------GCAUcACCUACGG- -5'
13941 3' -52.7 NC_003521.1 + 61785 0.69 0.959919
Target:  5'- ---cCGccGGCUCCGgcGUGGAUGCg -3'
miRNA:   3'- acuaGCauUCGGGGCauCACCUACGg -5'
13941 3' -52.7 NC_003521.1 + 77681 0.68 0.972449
Target:  5'- cGGcCGU-GGCCCCGUcGUcGGcUGCCg -3'
miRNA:   3'- aCUaGCAuUCGGGGCAuCA-CCuACGG- -5'
13941 3' -52.7 NC_003521.1 + 166337 0.68 0.979783
Target:  5'- ---cCGcuauGGCCCUGcgggAGUGGAUGCUg -3'
miRNA:   3'- acuaGCau--UCGGGGCa---UCACCUACGG- -5'
13941 3' -52.7 NC_003521.1 + 79590 0.68 0.981871
Target:  5'- aGAcccUgGUGGGUCgCGUGGUGGG-GCCc -3'
miRNA:   3'- aCU---AgCAUUCGGgGCAUCACCUaCGG- -5'
13941 3' -52.7 NC_003521.1 + 139250 0.67 0.983792
Target:  5'- aGGUgGcGGGCUCCGgguuGUGGAUGgCg -3'
miRNA:   3'- aCUAgCaUUCGGGGCau--CACCUACgG- -5'
13941 3' -52.7 NC_003521.1 + 133308 0.67 0.983792
Target:  5'- ---cUGcUGAGCCaCUGUGGUGGggGCUg -3'
miRNA:   3'- acuaGC-AUUCGG-GGCAUCACCuaCGG- -5'
13941 3' -52.7 NC_003521.1 + 45755 0.69 0.969623
Target:  5'- cGA-CGUGuagaaGGCUgCCGUGGUGGuggGCCg -3'
miRNA:   3'- aCUaGCAU-----UCGG-GGCAUCACCua-CGG- -5'
13941 3' -52.7 NC_003521.1 + 222189 0.69 0.966597
Target:  5'- cGAggcgccgCGgcAGCCCCGaagGGUGGc-GCCg -3'
miRNA:   3'- aCUa------GCauUCGGGGCa--UCACCuaCGG- -5'
13941 3' -52.7 NC_003521.1 + 221111 0.7 0.934561
Target:  5'- gUGAUCGUGAcCUCCGUGGUG--UGCg -3'
miRNA:   3'- -ACUAGCAUUcGGGGCAUCACcuACGg -5'
13941 3' -52.7 NC_003521.1 + 89157 0.71 0.92426
Target:  5'- cUGcUCGUGGGCCUCacGGUGGAccacgauuuUGCCg -3'
miRNA:   3'- -ACuAGCAUUCGGGGcaUCACCU---------ACGG- -5'
13941 3' -52.7 NC_003521.1 + 236858 0.71 0.92426
Target:  5'- -uGUCG-GAGCCCCGaGGcUGGcUGCCg -3'
miRNA:   3'- acUAGCaUUCGGGGCaUC-ACCuACGG- -5'
13941 3' -52.7 NC_003521.1 + 12848 0.76 0.696668
Target:  5'- cUGGUCGUGGuggguGCCgCCGUGGUGGucgguuugGCCa -3'
miRNA:   3'- -ACUAGCAUU-----CGG-GGCAUCACCua------CGG- -5'
13941 3' -52.7 NC_003521.1 + 117817 0.81 0.423907
Target:  5'- gGAUCGUAGGCUCCGaAGUGacGUGCCg -3'
miRNA:   3'- aCUAGCAUUCGGGGCaUCACc-UACGG- -5'
13941 3' -52.7 NC_003521.1 + 105115 0.66 0.994136
Target:  5'- gGGUCGUGAucucGCCCagCGUGucgGGggGCCg -3'
miRNA:   3'- aCUAGCAUU----CGGG--GCAUca-CCuaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.