miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 3' -52.7 NC_003521.1 + 101468 0.69 0.969623
Target:  5'- ---aCGUGcGCCUCGUAGUGGcgcgugagGUGCUc -3'
miRNA:   3'- acuaGCAUuCGGGGCAUCACC--------UACGG- -5'
13941 3' -52.7 NC_003521.1 + 101584 0.68 0.976808
Target:  5'- cGcgCGagGAGCCCCGUacaGGUGGuagcucaggacgucgGCCa -3'
miRNA:   3'- aCuaGCa-UUCGGGGCA---UCACCua-------------CGG- -5'
13941 3' -52.7 NC_003521.1 + 102333 0.67 0.987168
Target:  5'- gUGcgCGUGGGCgCCGacgccggGGUGGcgGCa -3'
miRNA:   3'- -ACuaGCAUUCGgGGCa------UCACCuaCGg -5'
13941 3' -52.7 NC_003521.1 + 105115 0.66 0.994136
Target:  5'- gGGUCGUGAucucGCCCagCGUGucgGGggGCCg -3'
miRNA:   3'- aCUAGCAUU----CGGG--GCAUca-CCuaCGG- -5'
13941 3' -52.7 NC_003521.1 + 106606 0.69 0.966597
Target:  5'- gGAcCGUGAGCaUCGUGGgacGAUGCCa -3'
miRNA:   3'- aCUaGCAUUCGgGGCAUCac-CUACGG- -5'
13941 3' -52.7 NC_003521.1 + 109254 0.66 0.993883
Target:  5'- aUGAUCaGgcucuGGCCcaccaCCGUGGUGGAgaccggguaggaggUGCCc -3'
miRNA:   3'- -ACUAG-Cau---UCGG-----GGCAUCACCU--------------ACGG- -5'
13941 3' -52.7 NC_003521.1 + 117817 0.81 0.423907
Target:  5'- gGAUCGUAGGCUCCGaAGUGacGUGCCg -3'
miRNA:   3'- aCUAGCAUUCGGGGCaUCACc-UACGG- -5'
13941 3' -52.7 NC_003521.1 + 119907 0.71 0.918757
Target:  5'- ----gGUGGGCCUgGaacaGGUGGAUGCCg -3'
miRNA:   3'- acuagCAUUCGGGgCa---UCACCUACGG- -5'
13941 3' -52.7 NC_003521.1 + 125851 0.67 0.988638
Target:  5'- gUGGUCGUAcAGCgCCuUGGUGGccGCg -3'
miRNA:   3'- -ACUAGCAU-UCGgGGcAUCACCuaCGg -5'
13941 3' -52.7 NC_003521.1 + 129375 0.68 0.979783
Target:  5'- aGAagGUGccgaagauGGCCUCGaAGUGGAUGUUg -3'
miRNA:   3'- aCUagCAU--------UCGGGGCaUCACCUACGG- -5'
13941 3' -52.7 NC_003521.1 + 133308 0.67 0.983792
Target:  5'- ---cUGcUGAGCCaCUGUGGUGGggGCUg -3'
miRNA:   3'- acuaGC-AUUCGG-GGCAUCACCuaCGG- -5'
13941 3' -52.7 NC_003521.1 + 135210 0.67 0.983792
Target:  5'- uUGAUgaaGUGGGCCUCGUccaccagcagcaGGUGGAaguucugGCCu -3'
miRNA:   3'- -ACUAg--CAUUCGGGGCA------------UCACCUa------CGG- -5'
13941 3' -52.7 NC_003521.1 + 139250 0.67 0.983792
Target:  5'- aGGUgGcGGGCUCCGgguuGUGGAUGgCg -3'
miRNA:   3'- aCUAgCaUUCGGGGCau--CACCUACgG- -5'
13941 3' -52.7 NC_003521.1 + 139379 0.68 0.975079
Target:  5'- aGAgcgcCGUGcucuuGGCCCCGcGGUGGucgAUGCUg -3'
miRNA:   3'- aCUa---GCAU-----UCGGGGCaUCACC---UACGG- -5'
13941 3' -52.7 NC_003521.1 + 143925 0.66 0.993164
Target:  5'- gUGGUCGUgguggaaGAGgUCCGU-GUGGAagcGCCg -3'
miRNA:   3'- -ACUAGCA-------UUCgGGGCAuCACCUa--CGG- -5'
13941 3' -52.7 NC_003521.1 + 145258 0.66 0.994136
Target:  5'- cGcgCG-AGGCCUCG--GUGGcAUGCCg -3'
miRNA:   3'- aCuaGCaUUCGGGGCauCACC-UACGG- -5'
13941 3' -52.7 NC_003521.1 + 149674 0.74 0.790443
Target:  5'- cGAcaUCGUGGGCCCCGccgggaagcugaGGUGGA-GCCc -3'
miRNA:   3'- aCU--AGCAUUCGGGGCa-----------UCACCUaCGG- -5'
13941 3' -52.7 NC_003521.1 + 166337 0.68 0.979783
Target:  5'- ---cCGcuauGGCCCUGcgggAGUGGAUGCUg -3'
miRNA:   3'- acuaGCau--UCGGGGCa---UCACCUACGG- -5'
13941 3' -52.7 NC_003521.1 + 183972 0.74 0.818558
Target:  5'- cGG-CGUAGGCCCCGUAGUccgccuGAUagGCCg -3'
miRNA:   3'- aCUaGCAUUCGGGGCAUCAc-----CUA--CGG- -5'
13941 3' -52.7 NC_003521.1 + 187296 0.66 0.995617
Target:  5'- --uUCGgcAGCCCgGUGG-GaGcgGCCg -3'
miRNA:   3'- acuAGCauUCGGGgCAUCaC-CuaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.