Results 1 - 20 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13941 | 3' | -52.7 | NC_003521.1 | + | 2948 | 0.7 | 0.952374 |
Target: 5'- gGGUCGgcAGUCCaacguugcUGUAaUGGGUGCCa -3' miRNA: 3'- aCUAGCauUCGGG--------GCAUcACCUACGG- -5' |
|||||||
13941 | 3' | -52.7 | NC_003521.1 | + | 10853 | 1.13 | 0.005223 |
Target: 5'- gUGAUCGUAAGCCCCGUAGUGGAUGCCg -3' miRNA: 3'- -ACUAGCAUUCGGGGCAUCACCUACGG- -5' |
|||||||
13941 | 3' | -52.7 | NC_003521.1 | + | 12848 | 0.76 | 0.696668 |
Target: 5'- cUGGUCGUGGuggguGCCgCCGUGGUGGucgguuugGCCa -3' miRNA: 3'- -ACUAGCAUU-----CGG-GGCAUCACCua------CGG- -5' |
|||||||
13941 | 3' | -52.7 | NC_003521.1 | + | 18965 | 0.73 | 0.843377 |
Target: 5'- aGAUCGUucGUUCCcugGUGGUGGAcGCCc -3' miRNA: 3'- aCUAGCAuuCGGGG---CAUCACCUaCGG- -5' |
|||||||
13941 | 3' | -52.7 | NC_003521.1 | + | 19395 | 0.66 | 0.993257 |
Target: 5'- ---cCGUGGGUCUCGUugccgagcacgcAGUGGuacGUGCCg -3' miRNA: 3'- acuaGCAUUCGGGGCA------------UCACC---UACGG- -5' |
|||||||
13941 | 3' | -52.7 | NC_003521.1 | + | 33953 | 0.71 | 0.900852 |
Target: 5'- cGGUUGUGAaaaCUCCGUAGaccccaggGGAUGCCg -3' miRNA: 3'- aCUAGCAUUc--GGGGCAUCa-------CCUACGG- -5' |
|||||||
13941 | 3' | -52.7 | NC_003521.1 | + | 44666 | 0.67 | 0.988067 |
Target: 5'- aGGUUGUAGGCCgUGagGGUGGAauaacgcaccucgGCCu -3' miRNA: 3'- aCUAGCAUUCGGgGCa-UCACCUa------------CGG- -5' |
|||||||
13941 | 3' | -52.7 | NC_003521.1 | + | 45755 | 0.69 | 0.969623 |
Target: 5'- cGA-CGUGuagaaGGCUgCCGUGGUGGuggGCCg -3' miRNA: 3'- aCUaGCAU-----UCGG-GGCAUCACCua-CGG- -5' |
|||||||
13941 | 3' | -52.7 | NC_003521.1 | + | 46873 | 0.7 | 0.934562 |
Target: 5'- -cGUCGUGGGUCCagaaGgcgaAGUGGGUGUCg -3' miRNA: 3'- acUAGCAUUCGGGg---Ca---UCACCUACGG- -5' |
|||||||
13941 | 3' | -52.7 | NC_003521.1 | + | 56219 | 0.72 | 0.887771 |
Target: 5'- -cGUCGUAcuCCCCGaAGUGGcacgAUGCCa -3' miRNA: 3'- acUAGCAUucGGGGCaUCACC----UACGG- -5' |
|||||||
13941 | 3' | -52.7 | NC_003521.1 | + | 60258 | 0.67 | 0.988638 |
Target: 5'- uUGAUCGacguGGCCCaCGaccUGGUGGG-GCUa -3' miRNA: 3'- -ACUAGCau--UCGGG-GC---AUCACCUaCGG- -5' |
|||||||
13941 | 3' | -52.7 | NC_003521.1 | + | 61785 | 0.69 | 0.959919 |
Target: 5'- ---cCGccGGCUCCGgcGUGGAUGCg -3' miRNA: 3'- acuaGCauUCGGGGCauCACCUACGg -5' |
|||||||
13941 | 3' | -52.7 | NC_003521.1 | + | 77681 | 0.68 | 0.972449 |
Target: 5'- cGGcCGU-GGCCCCGUcGUcGGcUGCCg -3' miRNA: 3'- aCUaGCAuUCGGGGCAuCA-CCuACGG- -5' |
|||||||
13941 | 3' | -52.7 | NC_003521.1 | + | 77870 | 0.68 | 0.972449 |
Target: 5'- cGAUggCGccGGCCUCGUAGUGGAaGUUg -3' miRNA: 3'- aCUA--GCauUCGGGGCAUCACCUaCGG- -5' |
|||||||
13941 | 3' | -52.7 | NC_003521.1 | + | 78897 | 0.67 | 0.988638 |
Target: 5'- gGGUCcacgcGGGCCUCGUAGacggGGAaGCCg -3' miRNA: 3'- aCUAGca---UUCGGGGCAUCa---CCUaCGG- -5' |
|||||||
13941 | 3' | -52.7 | NC_003521.1 | + | 79590 | 0.68 | 0.981871 |
Target: 5'- aGAcccUgGUGGGUCgCGUGGUGGG-GCCc -3' miRNA: 3'- aCU---AgCAUUCGGgGCAUCACCUaCGG- -5' |
|||||||
13941 | 3' | -52.7 | NC_003521.1 | + | 89157 | 0.71 | 0.92426 |
Target: 5'- cUGcUCGUGGGCCUCacGGUGGAccacgauuuUGCCg -3' miRNA: 3'- -ACuAGCAUUCGGGGcaUCACCU---------ACGG- -5' |
|||||||
13941 | 3' | -52.7 | NC_003521.1 | + | 92585 | 0.67 | 0.987168 |
Target: 5'- cGGUUGgcGGCUCCGgguUGGGUGUg -3' miRNA: 3'- aCUAGCauUCGGGGCaucACCUACGg -5' |
|||||||
13941 | 3' | -52.7 | NC_003521.1 | + | 93438 | 0.66 | 0.991184 |
Target: 5'- cGAcCGUcGAGCCCCGgUAGagGGAcGUCg -3' miRNA: 3'- aCUaGCA-UUCGGGGC-AUCa-CCUaCGG- -5' |
|||||||
13941 | 3' | -52.7 | NC_003521.1 | + | 100219 | 0.72 | 0.873807 |
Target: 5'- aGGUCGUAGGCCggCGaGGUGGAgcugggcgaggUGCCc -3' miRNA: 3'- aCUAGCAUUCGGg-GCaUCACCU-----------ACGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home