miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 3' -52.7 NC_003521.1 + 236858 0.71 0.92426
Target:  5'- -uGUCG-GAGCCCCGaGGcUGGcUGCCg -3'
miRNA:   3'- acUAGCaUUCGGGGCaUC-ACCuACGG- -5'
13941 3' -52.7 NC_003521.1 + 236693 0.74 0.809943
Target:  5'- cGGUUGUGgaacGGCCUCGUcuGGUugGGGUGCCu -3'
miRNA:   3'- aCUAGCAU----UCGGGGCA--UCA--CCUACGG- -5'
13941 3' -52.7 NC_003521.1 + 235231 0.66 0.991184
Target:  5'- ---aCGUAGGCCUCGUugguccgcaGGcUGGA-GCCg -3'
miRNA:   3'- acuaGCAUUCGGGGCA---------UC-ACCUaCGG- -5'
13941 3' -52.7 NC_003521.1 + 222189 0.69 0.966597
Target:  5'- cGAggcgccgCGgcAGCCCCGaagGGUGGc-GCCg -3'
miRNA:   3'- aCUa------GCauUCGGGGCa--UCACCuaCGG- -5'
13941 3' -52.7 NC_003521.1 + 221111 0.7 0.934561
Target:  5'- gUGAUCGUGAcCUCCGUGGUG--UGCg -3'
miRNA:   3'- -ACUAGCAUUcGGGGCAUCACcuACGg -5'
13941 3' -52.7 NC_003521.1 + 216491 0.67 0.989974
Target:  5'- cGcUCGUAGGCCUCGUcugcGUG--UGCCa -3'
miRNA:   3'- aCuAGCAUUCGGGGCAu---CACcuACGG- -5'
13941 3' -52.7 NC_003521.1 + 213734 0.66 0.994136
Target:  5'- aGA-CGgc-GCCgcagaaggCCGUGGUGGcgGCCa -3'
miRNA:   3'- aCUaGCauuCGG--------GGCAUCACCuaCGG- -5'
13941 3' -52.7 NC_003521.1 + 213706 0.8 0.478286
Target:  5'- aGAUUGUGGGCCUCGg---GGAUGCCc -3'
miRNA:   3'- aCUAGCAUUCGGGGCaucaCCUACGG- -5'
13941 3' -52.7 NC_003521.1 + 204200 0.66 0.991184
Target:  5'- cGAgggCGUcAGGCagCCGUGGUGGAagagGCUu -3'
miRNA:   3'- aCUa--GCA-UUCGg-GGCAUCACCUa---CGG- -5'
13941 3' -52.7 NC_003521.1 + 187296 0.66 0.995617
Target:  5'- --uUCGgcAGCCCgGUGG-GaGcgGCCg -3'
miRNA:   3'- acuAGCauUCGGGgCAUCaC-CuaCGG- -5'
13941 3' -52.7 NC_003521.1 + 183972 0.74 0.818558
Target:  5'- cGG-CGUAGGCCCCGUAGUccgccuGAUagGCCg -3'
miRNA:   3'- aCUaGCAUUCGGGGCAUCAc-----CUA--CGG- -5'
13941 3' -52.7 NC_003521.1 + 166337 0.68 0.979783
Target:  5'- ---cCGcuauGGCCCUGcgggAGUGGAUGCUg -3'
miRNA:   3'- acuaGCau--UCGGGGCa---UCACCUACGG- -5'
13941 3' -52.7 NC_003521.1 + 149674 0.74 0.790443
Target:  5'- cGAcaUCGUGGGCCCCGccgggaagcugaGGUGGA-GCCc -3'
miRNA:   3'- aCU--AGCAUUCGGGGCa-----------UCACCUaCGG- -5'
13941 3' -52.7 NC_003521.1 + 145258 0.66 0.994136
Target:  5'- cGcgCG-AGGCCUCG--GUGGcAUGCCg -3'
miRNA:   3'- aCuaGCaUUCGGGGCauCACC-UACGG- -5'
13941 3' -52.7 NC_003521.1 + 143925 0.66 0.993164
Target:  5'- gUGGUCGUgguggaaGAGgUCCGU-GUGGAagcGCCg -3'
miRNA:   3'- -ACUAGCA-------UUCgGGGCAuCACCUa--CGG- -5'
13941 3' -52.7 NC_003521.1 + 139379 0.68 0.975079
Target:  5'- aGAgcgcCGUGcucuuGGCCCCGcGGUGGucgAUGCUg -3'
miRNA:   3'- aCUa---GCAU-----UCGGGGCaUCACC---UACGG- -5'
13941 3' -52.7 NC_003521.1 + 139250 0.67 0.983792
Target:  5'- aGGUgGcGGGCUCCGgguuGUGGAUGgCg -3'
miRNA:   3'- aCUAgCaUUCGGGGCau--CACCUACgG- -5'
13941 3' -52.7 NC_003521.1 + 135210 0.67 0.983792
Target:  5'- uUGAUgaaGUGGGCCUCGUccaccagcagcaGGUGGAaguucugGCCu -3'
miRNA:   3'- -ACUAg--CAUUCGGGGCA------------UCACCUa------CGG- -5'
13941 3' -52.7 NC_003521.1 + 133308 0.67 0.983792
Target:  5'- ---cUGcUGAGCCaCUGUGGUGGggGCUg -3'
miRNA:   3'- acuaGC-AUUCGG-GGCAUCACCuaCGG- -5'
13941 3' -52.7 NC_003521.1 + 129375 0.68 0.979783
Target:  5'- aGAagGUGccgaagauGGCCUCGaAGUGGAUGUUg -3'
miRNA:   3'- aCUagCAU--------UCGGGGCaUCACCUACGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.