miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 3' -52.7 NC_003521.1 + 125851 0.67 0.988638
Target:  5'- gUGGUCGUAcAGCgCCuUGGUGGccGCg -3'
miRNA:   3'- -ACUAGCAU-UCGgGGcAUCACCuaCGg -5'
13941 3' -52.7 NC_003521.1 + 119907 0.71 0.918757
Target:  5'- ----gGUGGGCCUgGaacaGGUGGAUGCCg -3'
miRNA:   3'- acuagCAUUCGGGgCa---UCACCUACGG- -5'
13941 3' -52.7 NC_003521.1 + 117817 0.81 0.423907
Target:  5'- gGAUCGUAGGCUCCGaAGUGacGUGCCg -3'
miRNA:   3'- aCUAGCAUUCGGGGCaUCACc-UACGG- -5'
13941 3' -52.7 NC_003521.1 + 109254 0.66 0.993883
Target:  5'- aUGAUCaGgcucuGGCCcaccaCCGUGGUGGAgaccggguaggaggUGCCc -3'
miRNA:   3'- -ACUAG-Cau---UCGG-----GGCAUCACCU--------------ACGG- -5'
13941 3' -52.7 NC_003521.1 + 106606 0.69 0.966597
Target:  5'- gGAcCGUGAGCaUCGUGGgacGAUGCCa -3'
miRNA:   3'- aCUaGCAUUCGgGGCAUCac-CUACGG- -5'
13941 3' -52.7 NC_003521.1 + 105115 0.66 0.994136
Target:  5'- gGGUCGUGAucucGCCCagCGUGucgGGggGCCg -3'
miRNA:   3'- aCUAGCAUU----CGGG--GCAUca-CCuaCGG- -5'
13941 3' -52.7 NC_003521.1 + 102333 0.67 0.987168
Target:  5'- gUGcgCGUGGGCgCCGacgccggGGUGGcgGCa -3'
miRNA:   3'- -ACuaGCAUUCGgGGCa------UCACCuaCGg -5'
13941 3' -52.7 NC_003521.1 + 101584 0.68 0.976808
Target:  5'- cGcgCGagGAGCCCCGUacaGGUGGuagcucaggacgucgGCCa -3'
miRNA:   3'- aCuaGCa-UUCGGGGCA---UCACCua-------------CGG- -5'
13941 3' -52.7 NC_003521.1 + 101468 0.69 0.969623
Target:  5'- ---aCGUGcGCCUCGUAGUGGcgcgugagGUGCUc -3'
miRNA:   3'- acuaGCAUuCGGGGCAUCACC--------UACGG- -5'
13941 3' -52.7 NC_003521.1 + 100219 0.72 0.873807
Target:  5'- aGGUCGUAGGCCggCGaGGUGGAgcugggcgaggUGCCc -3'
miRNA:   3'- aCUAGCAUUCGGg-GCaUCACCU-----------ACGG- -5'
13941 3' -52.7 NC_003521.1 + 93438 0.66 0.991184
Target:  5'- cGAcCGUcGAGCCCCGgUAGagGGAcGUCg -3'
miRNA:   3'- aCUaGCA-UUCGGGGC-AUCa-CCUaCGG- -5'
13941 3' -52.7 NC_003521.1 + 92585 0.67 0.987168
Target:  5'- cGGUUGgcGGCUCCGgguUGGGUGUg -3'
miRNA:   3'- aCUAGCauUCGGGGCaucACCUACGg -5'
13941 3' -52.7 NC_003521.1 + 89157 0.71 0.92426
Target:  5'- cUGcUCGUGGGCCUCacGGUGGAccacgauuuUGCCg -3'
miRNA:   3'- -ACuAGCAUUCGGGGcaUCACCU---------ACGG- -5'
13941 3' -52.7 NC_003521.1 + 79590 0.68 0.981871
Target:  5'- aGAcccUgGUGGGUCgCGUGGUGGG-GCCc -3'
miRNA:   3'- aCU---AgCAUUCGGgGCAUCACCUaCGG- -5'
13941 3' -52.7 NC_003521.1 + 78897 0.67 0.988638
Target:  5'- gGGUCcacgcGGGCCUCGUAGacggGGAaGCCg -3'
miRNA:   3'- aCUAGca---UUCGGGGCAUCa---CCUaCGG- -5'
13941 3' -52.7 NC_003521.1 + 77870 0.68 0.972449
Target:  5'- cGAUggCGccGGCCUCGUAGUGGAaGUUg -3'
miRNA:   3'- aCUA--GCauUCGGGGCAUCACCUaCGG- -5'
13941 3' -52.7 NC_003521.1 + 77681 0.68 0.972449
Target:  5'- cGGcCGU-GGCCCCGUcGUcGGcUGCCg -3'
miRNA:   3'- aCUaGCAuUCGGGGCAuCA-CCuACGG- -5'
13941 3' -52.7 NC_003521.1 + 61785 0.69 0.959919
Target:  5'- ---cCGccGGCUCCGgcGUGGAUGCg -3'
miRNA:   3'- acuaGCauUCGGGGCauCACCUACGg -5'
13941 3' -52.7 NC_003521.1 + 60258 0.67 0.988638
Target:  5'- uUGAUCGacguGGCCCaCGaccUGGUGGG-GCUa -3'
miRNA:   3'- -ACUAGCau--UCGGG-GC---AUCACCUaCGG- -5'
13941 3' -52.7 NC_003521.1 + 56219 0.72 0.887771
Target:  5'- -cGUCGUAcuCCCCGaAGUGGcacgAUGCCa -3'
miRNA:   3'- acUAGCAUucGGGGCaUCACC----UACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.