Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13941 | 3' | -52.7 | NC_003521.1 | + | 45755 | 0.69 | 0.969623 |
Target: 5'- cGA-CGUGuagaaGGCUgCCGUGGUGGuggGCCg -3' miRNA: 3'- aCUaGCAU-----UCGG-GGCAUCACCua-CGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 101468 | 0.69 | 0.969623 |
Target: 5'- ---aCGUGcGCCUCGUAGUGGcgcgugagGUGCUc -3' miRNA: 3'- acuaGCAUuCGGGGCAUCACC--------UACGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 77681 | 0.68 | 0.972449 |
Target: 5'- cGGcCGU-GGCCCCGUcGUcGGcUGCCg -3' miRNA: 3'- aCUaGCAuUCGGGGCAuCA-CCuACGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 77870 | 0.68 | 0.972449 |
Target: 5'- cGAUggCGccGGCCUCGUAGUGGAaGUUg -3' miRNA: 3'- aCUA--GCauUCGGGGCAUCACCUaCGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 139379 | 0.68 | 0.975079 |
Target: 5'- aGAgcgcCGUGcucuuGGCCCCGcGGUGGucgAUGCUg -3' miRNA: 3'- aCUa---GCAU-----UCGGGGCaUCACC---UACGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 101584 | 0.68 | 0.976808 |
Target: 5'- cGcgCGagGAGCCCCGUacaGGUGGuagcucaggacgucgGCCa -3' miRNA: 3'- aCuaGCa-UUCGGGGCA---UCACCua-------------CGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 166337 | 0.68 | 0.979783 |
Target: 5'- ---cCGcuauGGCCCUGcgggAGUGGAUGCUg -3' miRNA: 3'- acuaGCau--UCGGGGCa---UCACCUACGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 129375 | 0.68 | 0.979783 |
Target: 5'- aGAagGUGccgaagauGGCCUCGaAGUGGAUGUUg -3' miRNA: 3'- aCUagCAU--------UCGGGGCaUCACCUACGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 79590 | 0.68 | 0.981871 |
Target: 5'- aGAcccUgGUGGGUCgCGUGGUGGG-GCCc -3' miRNA: 3'- aCU---AgCAUUCGGgGCAUCACCUaCGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 139250 | 0.67 | 0.983792 |
Target: 5'- aGGUgGcGGGCUCCGgguuGUGGAUGgCg -3' miRNA: 3'- aCUAgCaUUCGGGGCau--CACCUACgG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 135210 | 0.67 | 0.983792 |
Target: 5'- uUGAUgaaGUGGGCCUCGUccaccagcagcaGGUGGAaguucugGCCu -3' miRNA: 3'- -ACUAg--CAUUCGGGGCA------------UCACCUa------CGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 133308 | 0.67 | 0.983792 |
Target: 5'- ---cUGcUGAGCCaCUGUGGUGGggGCUg -3' miRNA: 3'- acuaGC-AUUCGG-GGCAUCACCuaCGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 102333 | 0.67 | 0.987168 |
Target: 5'- gUGcgCGUGGGCgCCGacgccggGGUGGcgGCa -3' miRNA: 3'- -ACuaGCAUUCGgGGCa------UCACCuaCGg -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 92585 | 0.67 | 0.987168 |
Target: 5'- cGGUUGgcGGCUCCGgguUGGGUGUg -3' miRNA: 3'- aCUAGCauUCGGGGCaucACCUACGg -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 44666 | 0.67 | 0.988067 |
Target: 5'- aGGUUGUAGGCCgUGagGGUGGAauaacgcaccucgGCCu -3' miRNA: 3'- aCUAGCAUUCGGgGCa-UCACCUa------------CGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 60258 | 0.67 | 0.988638 |
Target: 5'- uUGAUCGacguGGCCCaCGaccUGGUGGG-GCUa -3' miRNA: 3'- -ACUAGCau--UCGGG-GC---AUCACCUaCGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 125851 | 0.67 | 0.988638 |
Target: 5'- gUGGUCGUAcAGCgCCuUGGUGGccGCg -3' miRNA: 3'- -ACUAGCAU-UCGgGGcAUCACCuaCGg -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 78897 | 0.67 | 0.988638 |
Target: 5'- gGGUCcacgcGGGCCUCGUAGacggGGAaGCCg -3' miRNA: 3'- aCUAGca---UUCGGGGCAUCa---CCUaCGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 216491 | 0.67 | 0.989974 |
Target: 5'- cGcUCGUAGGCCUCGUcugcGUG--UGCCa -3' miRNA: 3'- aCuAGCAUUCGGGGCAu---CACcuACGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 235231 | 0.66 | 0.991184 |
Target: 5'- ---aCGUAGGCCUCGUugguccgcaGGcUGGA-GCCg -3' miRNA: 3'- acuaGCAUUCGGGGCA---------UC-ACCUaCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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