Results 41 - 49 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 13941 | 3' | -52.7 | NC_003521.1 | + | 235231 | 0.66 | 0.991184 |
|
Target: 5'- ---aCGUAGGCCUCGUugguccgcaGGcUGGA-GCCg -3' miRNA: 3'- acuaGCAUUCGGGGCA---------UC-ACCUaCGG- -5' |
|||||||
| 13941 | 3' | -52.7 | NC_003521.1 | + | 204200 | 0.66 | 0.991184 |
|
Target: 5'- cGAgggCGUcAGGCagCCGUGGUGGAagagGCUu -3' miRNA: 3'- aCUa--GCA-UUCGg-GGCAUCACCUa---CGG- -5' |
|||||||
| 13941 | 3' | -52.7 | NC_003521.1 | + | 143925 | 0.66 | 0.993164 |
|
Target: 5'- gUGGUCGUgguggaaGAGgUCCGU-GUGGAagcGCCg -3' miRNA: 3'- -ACUAGCA-------UUCgGGGCAuCACCUa--CGG- -5' |
|||||||
| 13941 | 3' | -52.7 | NC_003521.1 | + | 19395 | 0.66 | 0.993257 |
|
Target: 5'- ---cCGUGGGUCUCGUugccgagcacgcAGUGGuacGUGCCg -3' miRNA: 3'- acuaGCAUUCGGGGCA------------UCACC---UACGG- -5' |
|||||||
| 13941 | 3' | -52.7 | NC_003521.1 | + | 109254 | 0.66 | 0.993883 |
|
Target: 5'- aUGAUCaGgcucuGGCCcaccaCCGUGGUGGAgaccggguaggaggUGCCc -3' miRNA: 3'- -ACUAG-Cau---UCGG-----GGCAUCACCU--------------ACGG- -5' |
|||||||
| 13941 | 3' | -52.7 | NC_003521.1 | + | 213734 | 0.66 | 0.994136 |
|
Target: 5'- aGA-CGgc-GCCgcagaaggCCGUGGUGGcgGCCa -3' miRNA: 3'- aCUaGCauuCGG--------GGCAUCACCuaCGG- -5' |
|||||||
| 13941 | 3' | -52.7 | NC_003521.1 | + | 145258 | 0.66 | 0.994136 |
|
Target: 5'- cGcgCG-AGGCCUCG--GUGGcAUGCCg -3' miRNA: 3'- aCuaGCaUUCGGGGCauCACC-UACGG- -5' |
|||||||
| 13941 | 3' | -52.7 | NC_003521.1 | + | 105115 | 0.66 | 0.994136 |
|
Target: 5'- gGGUCGUGAucucGCCCagCGUGucgGGggGCCg -3' miRNA: 3'- aCUAGCAUU----CGGG--GCAUca-CCuaCGG- -5' |
|||||||
| 13941 | 3' | -52.7 | NC_003521.1 | + | 187296 | 0.66 | 0.995617 |
|
Target: 5'- --uUCGgcAGCCCgGUGG-GaGcgGCCg -3' miRNA: 3'- acuAGCauUCGGGgCAUCaC-CuaCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home