Results 41 - 49 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 13941 | 3' | -52.7 | NC_003521.1 | + | 117817 | 0.81 | 0.423907 |
|
Target: 5'- gGAUCGUAGGCUCCGaAGUGacGUGCCg -3' miRNA: 3'- aCUAGCAUUCGGGGCaUCACc-UACGG- -5' |
|||||||
| 13941 | 3' | -52.7 | NC_003521.1 | + | 12848 | 0.76 | 0.696668 |
|
Target: 5'- cUGGUCGUGGuggguGCCgCCGUGGUGGucgguuugGCCa -3' miRNA: 3'- -ACUAGCAUU-----CGG-GGCAUCACCua------CGG- -5' |
|||||||
| 13941 | 3' | -52.7 | NC_003521.1 | + | 236858 | 0.71 | 0.92426 |
|
Target: 5'- -uGUCG-GAGCCCCGaGGcUGGcUGCCg -3' miRNA: 3'- acUAGCaUUCGGGGCaUC-ACCuACGG- -5' |
|||||||
| 13941 | 3' | -52.7 | NC_003521.1 | + | 89157 | 0.71 | 0.92426 |
|
Target: 5'- cUGcUCGUGGGCCUCacGGUGGAccacgauuuUGCCg -3' miRNA: 3'- -ACuAGCAUUCGGGGcaUCACCU---------ACGG- -5' |
|||||||
| 13941 | 3' | -52.7 | NC_003521.1 | + | 221111 | 0.7 | 0.934561 |
|
Target: 5'- gUGAUCGUGAcCUCCGUGGUG--UGCg -3' miRNA: 3'- -ACUAGCAUUcGGGGCAUCACcuACGg -5' |
|||||||
| 13941 | 3' | -52.7 | NC_003521.1 | + | 222189 | 0.69 | 0.966597 |
|
Target: 5'- cGAggcgccgCGgcAGCCCCGaagGGUGGc-GCCg -3' miRNA: 3'- aCUa------GCauUCGGGGCa--UCACCuaCGG- -5' |
|||||||
| 13941 | 3' | -52.7 | NC_003521.1 | + | 45755 | 0.69 | 0.969623 |
|
Target: 5'- cGA-CGUGuagaaGGCUgCCGUGGUGGuggGCCg -3' miRNA: 3'- aCUaGCAU-----UCGG-GGCAUCACCua-CGG- -5' |
|||||||
| 13941 | 3' | -52.7 | NC_003521.1 | + | 77681 | 0.68 | 0.972449 |
|
Target: 5'- cGGcCGU-GGCCCCGUcGUcGGcUGCCg -3' miRNA: 3'- aCUaGCAuUCGGGGCAuCA-CCuACGG- -5' |
|||||||
| 13941 | 3' | -52.7 | NC_003521.1 | + | 105115 | 0.66 | 0.994136 |
|
Target: 5'- gGGUCGUGAucucGCCCagCGUGucgGGggGCCg -3' miRNA: 3'- aCUAGCAUU----CGGG--GCAUca-CCuaCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home