miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13942 3' -51 NC_003521.1 + 240928 0.69 0.973558
Target:  5'- uUCUGCACggcucc--GGCCGCCGCu -3'
miRNA:   3'- uAGGUGUGaaauaauuCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 233170 0.72 0.902659
Target:  5'- uGUCCGCGCcgccgUGGcGGCCGCCGUu -3'
miRNA:   3'- -UAGGUGUGaaauaAUU-CCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 227907 0.66 0.99696
Target:  5'- gGUCCugACcaggcgUGccgcucGGGCCGCCGUg -3'
miRNA:   3'- -UAGGugUGaaaua-AU------UCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 227159 0.68 0.98858
Target:  5'- -gCCGCGCU-------GGCCGCCGUg -3'
miRNA:   3'- uaGGUGUGAaauaauuCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 223655 0.66 0.997294
Target:  5'- -gCCACACggcccgcgucGGGgCGCCGCGa -3'
miRNA:   3'- uaGGUGUGaaauaau---UCCgGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 223625 0.67 0.994325
Target:  5'- -gUCGCuGCUgacc-AAGGCCGCCGCc -3'
miRNA:   3'- uaGGUG-UGAaauaaUUCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 223451 0.67 0.993438
Target:  5'- gGUCC-CuCUcgAgucuGGGCCGCCGCGc -3'
miRNA:   3'- -UAGGuGuGAaaUaau-UCCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 221920 0.68 0.987212
Target:  5'- -gCCACcCUUc---GGGGCUGCCGCGg -3'
miRNA:   3'- uaGGUGuGAAauaaUUCCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 216125 0.66 0.997835
Target:  5'- -gCgGCGCg-----GAGGCCGCgGCAg -3'
miRNA:   3'- uaGgUGUGaaauaaUUCCGGCGgCGU- -5'
13942 3' -51 NC_003521.1 + 212087 0.66 0.995809
Target:  5'- -aUCACAgcgauCUUUAUUAGGGCUGUCGa- -3'
miRNA:   3'- uaGGUGU-----GAAAUAAUUCCGGCGGCgu -5'
13942 3' -51 NC_003521.1 + 208879 0.69 0.97383
Target:  5'- -aCCGCGgUgacuggcuauGGCCGCCGCAa -3'
miRNA:   3'- uaGGUGUgAaauaauu---CCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 203408 0.7 0.968913
Target:  5'- -gCCACGCcuccc--AGGCCGUCGCAc -3'
miRNA:   3'- uaGGUGUGaaauaauUCCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 200388 0.69 0.973558
Target:  5'- uUCUGCACggcucc--GGCCGCCGCu -3'
miRNA:   3'- uAGGUGUGaaauaauuCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 197750 0.66 0.99696
Target:  5'- cUCCGCGCcg---UccGGcCCGCCGCGc -3'
miRNA:   3'- uAGGUGUGaaauaAuuCC-GGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 181525 0.66 0.996806
Target:  5'- gGUgUGCGCgaagacuagcGGGCCGCCGCGa -3'
miRNA:   3'- -UAgGUGUGaaauaau---UCCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 179985 0.67 0.994325
Target:  5'- uGUUCAUGCUcucgc-GGGCCGCCGUc -3'
miRNA:   3'- -UAGGUGUGAaauaauUCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 171112 0.66 0.995677
Target:  5'- -aCCGCGuaccuc-AGGGCCGCCGCc -3'
miRNA:   3'- uaGGUGUgaaauaaUUCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 166432 0.67 0.991214
Target:  5'- cGUCCACGCacgUGUagaucgAGGGCgagccguCGCCGCAc -3'
miRNA:   3'- -UAGGUGUGaa-AUAa-----UUCCG-------GCGGCGU- -5'
13942 3' -51 NC_003521.1 + 164990 0.69 0.981725
Target:  5'- -cCCGCGCUggugguAGGCCGCacCGCGu -3'
miRNA:   3'- uaGGUGUGAaauaauUCCGGCG--GCGU- -5'
13942 3' -51 NC_003521.1 + 164602 0.67 0.991332
Target:  5'- -gCCACGCcacc----GGCCGCCGCc -3'
miRNA:   3'- uaGGUGUGaaauaauuCCGGCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.