miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13942 3' -51 NC_003521.1 + 75711 0.66 0.995677
Target:  5'- cGUCCGCACcaca-----GCCGCCGCu -3'
miRNA:   3'- -UAGGUGUGaaauaauucCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 125999 0.68 0.988725
Target:  5'- uGUCCguGCACcgu-----GGCCGCCGCGu -3'
miRNA:   3'- -UAGG--UGUGaaauaauuCCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 41983 0.68 0.990095
Target:  5'- -gCCGCGCcUUcUUAAGGUCGCaGCAg -3'
miRNA:   3'- uaGGUGUGaAAuAAUUCCGGCGgCGU- -5'
13942 3' -51 NC_003521.1 + 166432 0.67 0.991214
Target:  5'- cGUCCACGCacgUGUagaucgAGGGCgagccguCGCCGCAc -3'
miRNA:   3'- -UAGGUGUGaa-AUAa-----UUCCG-------GCGGCGU- -5'
13942 3' -51 NC_003521.1 + 164602 0.67 0.991332
Target:  5'- -gCCACGCcacc----GGCCGCCGCc -3'
miRNA:   3'- uaGGUGUGaaauaauuCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 31886 0.67 0.992443
Target:  5'- -aCCGCACcgcc---AGGCCGCgGCAc -3'
miRNA:   3'- uaGGUGUGaaauaauUCCGGCGgCGU- -5'
13942 3' -51 NC_003521.1 + 921 0.67 0.993438
Target:  5'- cUCCAaagacaACUag---AAGGCCGCUGCGa -3'
miRNA:   3'- uAGGUg-----UGAaauaaUUCCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 223451 0.67 0.993438
Target:  5'- gGUCC-CuCUcgAgucuGGGCCGCCGCGc -3'
miRNA:   3'- -UAGGuGuGAaaUaau-UCCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 179985 0.67 0.994325
Target:  5'- uGUUCAUGCUcucgc-GGGCCGCCGUc -3'
miRNA:   3'- -UAGGUGUGAaauaauUCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 221920 0.68 0.987212
Target:  5'- -gCCACcCUUc---GGGGCUGCCGCGg -3'
miRNA:   3'- uaGGUGuGAAauaaUUCCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 55860 0.69 0.981092
Target:  5'- gGUCCACGCUggcccgca-CCGCCGCGa -3'
miRNA:   3'- -UAGGUGUGAaauaauuccGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 102435 0.69 0.97863
Target:  5'- gAUCCAgACgcgccgcAGGCCGCgGCAg -3'
miRNA:   3'- -UAGGUgUGaaauaauUCCGGCGgCGU- -5'
13942 3' -51 NC_003521.1 + 233170 0.72 0.902659
Target:  5'- uGUCCGCGCcgccgUGGcGGCCGCCGUu -3'
miRNA:   3'- -UAGGUGUGaaauaAUU-CCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 54148 0.72 0.915084
Target:  5'- -aCCGCcgGCgUUGgaGAGGCCGCCGCc -3'
miRNA:   3'- uaGGUG--UGaAAUaaUUCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 87919 0.71 0.945925
Target:  5'- cUCCugGCU-------GGCCGCCGCGc -3'
miRNA:   3'- uAGGugUGAaauaauuCCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 142314 0.7 0.9564
Target:  5'- -gCCGCGCgcgUcgUcgcaacugggugcgcGAGGCCGCCGCc -3'
miRNA:   3'- uaGGUGUGaa-AuaA---------------UUCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 203408 0.7 0.968913
Target:  5'- -gCCACGCcuccc--AGGCCGUCGCAc -3'
miRNA:   3'- uaGGUGUGaaauaauUCCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 200388 0.69 0.973558
Target:  5'- uUCUGCACggcucc--GGCCGCCGCu -3'
miRNA:   3'- uAGGUGUGaaauaauuCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 125892 0.69 0.976445
Target:  5'- gGUCCACGCccagcaugcacGAGGCCcgGCCGCGc -3'
miRNA:   3'- -UAGGUGUGaaauaa-----UUCCGG--CGGCGU- -5'
13942 3' -51 NC_003521.1 + 120850 0.69 0.976944
Target:  5'- -gCCAUGCUggAcucggccUUGAGGCgGCCGCGc -3'
miRNA:   3'- uaGGUGUGAaaU-------AAUUCCGgCGGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.