Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13942 | 3' | -51 | NC_003521.1 | + | 12409 | 1.07 | 0.015374 |
Target: 5'- aAUCCACACUUUAUUAAGGCCGCCGCAc -3' miRNA: 3'- -UAGGUGUGAAAUAAUUCCGGCGGCGU- -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 163490 | 0.67 | 0.993982 |
Target: 5'- cGUCCGCGaguccc--AGGCCGCCGgAg -3' miRNA: 3'- -UAGGUGUgaaauaauUCCGGCGGCgU- -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 223625 | 0.67 | 0.994325 |
Target: 5'- -gUCGCuGCUgacc-AAGGCCGCCGCc -3' miRNA: 3'- uaGGUG-UGAaauaaUUCCGGCGGCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 139039 | 0.66 | 0.997835 |
Target: 5'- -gCCGCACgaggUGUaGAGGUCGuaGCAg -3' miRNA: 3'- uaGGUGUGaa--AUAaUUCCGGCggCGU- -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 54760 | 0.7 | 0.958691 |
Target: 5'- gGUCCACGCc------GGGCCGCCGg- -3' miRNA: 3'- -UAGGUGUGaaauaauUCCGGCGGCgu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 71683 | 0.7 | 0.962325 |
Target: 5'- cGUCCuCugUcagGUUcGGGGCCGCCGCc -3' miRNA: 3'- -UAGGuGugAaa-UAA-UUCCGGCGGCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 240928 | 0.69 | 0.973558 |
Target: 5'- uUCUGCACggcucc--GGCCGCCGCu -3' miRNA: 3'- uAGGUGUGaaauaauuCCGGCGGCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 379 | 0.69 | 0.973558 |
Target: 5'- uUCUGCACggcucc--GGCCGCCGCu -3' miRNA: 3'- uAGGUGUGaaauaauuCCGGCGGCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 160790 | 0.69 | 0.981304 |
Target: 5'- cUCCGCGuacgag-GAGGCUGCCGCc -3' miRNA: 3'- uAGGUGUgaaauaaUUCCGGCGGCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 118233 | 0.67 | 0.993248 |
Target: 5'- cGUCguaGCGCUggugcu-GGCCGCCGCc -3' miRNA: 3'- -UAGg--UGUGAaauaauuCCGGCGGCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 227159 | 0.68 | 0.98858 |
Target: 5'- -gCCGCGCU-------GGCCGCCGUg -3' miRNA: 3'- uaGGUGUGAaauaauuCCGGCGGCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 142564 | 0.69 | 0.979094 |
Target: 5'- --aCGCGCgcggcu-GGGCCGCUGCAg -3' miRNA: 3'- uagGUGUGaaauaauUCCGGCGGCGU- -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 43715 | 0.72 | 0.902659 |
Target: 5'- -cCCGCugUgagaGUUccAGGGCCGCCGCc -3' miRNA: 3'- uaGGUGugAaa--UAA--UUCCGGCGGCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 117202 | 0.68 | 0.988725 |
Target: 5'- cGUCCACGCU--GUUGcccagcAGGCCGuaGCu -3' miRNA: 3'- -UAGGUGUGAaaUAAU------UCCGGCggCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 103512 | 0.72 | 0.915084 |
Target: 5'- aGUgCACGCgcgaaccgUUAUUcuuGGGCCGCCGCc -3' miRNA: 3'- -UAgGUGUGa-------AAUAAu--UCCGGCGGCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 208879 | 0.69 | 0.97383 |
Target: 5'- -aCCGCGgUgacuggcuauGGCCGCCGCAa -3' miRNA: 3'- uaGGUGUgAaauaauu---CCGGCGGCGU- -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 43763 | 0.67 | 0.991332 |
Target: 5'- ---gGCGCUgacggAUguuGGCCGCCGCGg -3' miRNA: 3'- uaggUGUGAaa---UAauuCCGGCGGCGU- -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 73100 | 0.67 | 0.994325 |
Target: 5'- -gCCGCGCcc-----AGGCCGUCGCGg -3' miRNA: 3'- uaGGUGUGaaauaauUCCGGCGGCGU- -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 136558 | 0.72 | 0.920924 |
Target: 5'- cUCCACcuGCUUU-UUGAGGCgGUCGCGc -3' miRNA: 3'- uAGGUG--UGAAAuAAUUCCGgCGGCGU- -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 45818 | 0.7 | 0.966058 |
Target: 5'- cUCCACGCUcaccauucGCCGCCGCu -3' miRNA: 3'- uAGGUGUGAaauaauucCGGCGGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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