Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13942 | 3' | -51 | NC_003521.1 | + | 164035 | 0.66 | 0.997428 |
Target: 5'- -gCCGCuACcgUUGUUGccGCCGCCGUg -3' miRNA: 3'- uaGGUG-UGa-AAUAAUucCGGCGGCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 223625 | 0.67 | 0.994325 |
Target: 5'- -gUCGCuGCUgacc-AAGGCCGCCGCc -3' miRNA: 3'- uaGGUG-UGAaauaaUUCCGGCGGCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 142564 | 0.69 | 0.979094 |
Target: 5'- --aCGCGCgcggcu-GGGCCGCUGCAg -3' miRNA: 3'- uagGUGUGaaauaauUCCGGCGGCGU- -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 197750 | 0.66 | 0.99696 |
Target: 5'- cUCCGCGCcg---UccGGcCCGCCGCGc -3' miRNA: 3'- uAGGUGUGaaauaAuuCC-GGCGGCGU- -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 139039 | 0.66 | 0.997835 |
Target: 5'- -gCCGCACgaggUGUaGAGGUCGuaGCAg -3' miRNA: 3'- uaGGUGUGaa--AUAaUUCCGGCggCGU- -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 89490 | 0.66 | 0.997428 |
Target: 5'- cUCCGCGCUg----GAGGUCgGCCGg- -3' miRNA: 3'- uAGGUGUGAaauaaUUCCGG-CGGCgu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 208879 | 0.69 | 0.97383 |
Target: 5'- -aCCGCGgUgacuggcuauGGCCGCCGCAa -3' miRNA: 3'- uaGGUGUgAaauaauu---CCGGCGGCGU- -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 379 | 0.69 | 0.973558 |
Target: 5'- uUCUGCACggcucc--GGCCGCCGCu -3' miRNA: 3'- uAGGUGUGaaauaauuCCGGCGGCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 45774 | 0.66 | 0.995609 |
Target: 5'- aGUCCAUGCggcucgacggcgacgUGUagAAGGCUGCCGUg -3' miRNA: 3'- -UAGGUGUGaa-------------AUAa-UUCCGGCGGCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 200388 | 0.69 | 0.973558 |
Target: 5'- uUCUGCACggcucc--GGCCGCCGCu -3' miRNA: 3'- uAGGUGUGaaauaauuCCGGCGGCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 157592 | 0.66 | 0.997428 |
Target: 5'- cUCCGCGCgagugcGUgcggGAGGCCGUaCGCu -3' miRNA: 3'- uAGGUGUGaaa---UAa---UUCCGGCG-GCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 166432 | 0.67 | 0.991214 |
Target: 5'- cGUCCACGCacgUGUagaucgAGGGCgagccguCGCCGCAc -3' miRNA: 3'- -UAGGUGUGaa-AUAa-----UUCCG-------GCGGCGU- -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 41983 | 0.68 | 0.990095 |
Target: 5'- -gCCGCGCcUUcUUAAGGUCGCaGCAg -3' miRNA: 3'- uaGGUGUGaAAuAAUUCCGGCGgCGU- -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 125999 | 0.68 | 0.988725 |
Target: 5'- uGUCCguGCACcgu-----GGCCGCCGCGu -3' miRNA: 3'- -UAGG--UGUGaaauaauuCCGGCGGCGU- -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 212087 | 0.66 | 0.995809 |
Target: 5'- -aUCACAgcgauCUUUAUUAGGGCUGUCGa- -3' miRNA: 3'- uaGGUGU-----GAAAUAAUUCCGGCGGCgu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 78898 | 0.66 | 0.996422 |
Target: 5'- gGUCCACGCgggccucgUAgacGGGGaaGCCGCGc -3' miRNA: 3'- -UAGGUGUGaa------AUaa-UUCCggCGGCGU- -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 129780 | 0.66 | 0.996646 |
Target: 5'- uGUCCcgcGCACgugcgcgccGAGGCCGaCCGCGu -3' miRNA: 3'- -UAGG---UGUGaaauaa---UUCCGGC-GGCGU- -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 181525 | 0.66 | 0.996806 |
Target: 5'- gGUgUGCGCgaagacuagcGGGCCGCCGCGa -3' miRNA: 3'- -UAgGUGUGaaauaau---UCCGGCGGCGU- -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 118047 | 0.66 | 0.996858 |
Target: 5'- gGUCCGCAUUgcucuc-GGCCGCCa-- -3' miRNA: 3'- -UAGGUGUGAaauaauuCCGGCGGcgu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 54277 | 0.66 | 0.997428 |
Target: 5'- cUCCACgGCgaa---GAGGCCGuuGCGg -3' miRNA: 3'- uAGGUG-UGaaauaaUUCCGGCggCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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