miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13943 3' -58.4 NC_003521.1 + 19741 0.66 0.89352
Target:  5'- gCUGCcGCUUuGCGGCGguAGAG-GAGGg -3'
miRNA:   3'- -GACGuCGAGcCGUCGC--UCUCaCUCCa -5'
13943 3' -58.4 NC_003521.1 + 71811 0.66 0.892877
Target:  5'- -gGCGGCgucgucuUCGGCGGCGGGcucGGUGAcGUc -3'
miRNA:   3'- gaCGUCG-------AGCCGUCGCUC---UCACUcCA- -5'
13943 3' -58.4 NC_003521.1 + 103057 0.66 0.886999
Target:  5'- gCUGCAGacagggCGGguGCGcGGGcGAGGg -3'
miRNA:   3'- -GACGUCga----GCCguCGCuCUCaCUCCa -5'
13943 3' -58.4 NC_003521.1 + 55247 0.66 0.886999
Target:  5'- -aGCGGCUCGcCGGCGAGcccgcgGGGGa -3'
miRNA:   3'- gaCGUCGAGCcGUCGCUCuca---CUCCa -5'
13943 3' -58.4 NC_003521.1 + 116179 0.66 0.886999
Target:  5'- gCUGCuGCUCcuguGGCcGCgGAGAG-GAGGg -3'
miRNA:   3'- -GACGuCGAG----CCGuCG-CUCUCaCUCCa -5'
13943 3' -58.4 NC_003521.1 + 215052 0.66 0.880269
Target:  5'- -gGCGGUgaagaggaCGGCGGCGAGcGG-GAGGg -3'
miRNA:   3'- gaCGUCGa-------GCCGUCGCUC-UCaCUCCa -5'
13943 3' -58.4 NC_003521.1 + 154663 0.66 0.873332
Target:  5'- -gGCcgaGGC-CGGCAGCGAGAcgcugGAGGc -3'
miRNA:   3'- gaCG---UCGaGCCGUCGCUCUca---CUCCa -5'
13943 3' -58.4 NC_003521.1 + 59166 0.66 0.873332
Target:  5'- gCUGCGGCaCGGCGccGCGGGcAGUcAGGa -3'
miRNA:   3'- -GACGUCGaGCCGU--CGCUC-UCAcUCCa -5'
13943 3' -58.4 NC_003521.1 + 204110 0.66 0.872627
Target:  5'- -gGguGCUCGGCGGCGAcauccgcGAc-GAGGg -3'
miRNA:   3'- gaCguCGAGCCGUCGCU-------CUcaCUCCa -5'
13943 3' -58.4 NC_003521.1 + 50523 0.66 0.866193
Target:  5'- gCUGCAGCggcaguaCGGCGugauCGAGGGcGAGGa -3'
miRNA:   3'- -GACGUCGa------GCCGUc---GCUCUCaCUCCa -5'
13943 3' -58.4 NC_003521.1 + 98964 0.66 0.861815
Target:  5'- -gGCGGCUagcgaCGGCGGCGccuuuaggaggcgucAGGG-GAGGUa -3'
miRNA:   3'- gaCGUCGA-----GCCGUCGC---------------UCUCaCUCCA- -5'
13943 3' -58.4 NC_003521.1 + 202627 0.66 0.858113
Target:  5'- -aGCAGgUCGGCGGCcGugggacguugaccAGAG-GAGGUa -3'
miRNA:   3'- gaCGUCgAGCCGUCG-C-------------UCUCaCUCCA- -5'
13943 3' -58.4 NC_003521.1 + 238688 0.66 0.858113
Target:  5'- -aGCAGgUCGGCGGCcGugggacguugaccAGAG-GAGGUa -3'
miRNA:   3'- gaCGUCgAGCCGUCG-C-------------UCUCaCUCCA- -5'
13943 3' -58.4 NC_003521.1 + 118459 0.67 0.845951
Target:  5'- -cGCGcGCUCGGCggccccgacuuugccGGCGGGcgucgucugcggcGGUGGGGUg -3'
miRNA:   3'- gaCGU-CGAGCCG---------------UCGCUC-------------UCACUCCA- -5'
13943 3' -58.4 NC_003521.1 + 105342 0.67 0.843618
Target:  5'- aCUGCGGUgguggCGGCGGUGGGAucgccccUGGGGc -3'
miRNA:   3'- -GACGUCGa----GCCGUCGCUCUc------ACUCCa -5'
13943 3' -58.4 NC_003521.1 + 54332 0.67 0.843618
Target:  5'- gCUGgGGCUCGGCGGCaucggcGGAGgcgGcGGUg -3'
miRNA:   3'- -GACgUCGAGCCGUCGc-----UCUCa--CuCCA- -5'
13943 3' -58.4 NC_003521.1 + 227104 0.67 0.843618
Target:  5'- cCUGCccGGCgCGGCGGCGGGc--GAGGa -3'
miRNA:   3'- -GACG--UCGaGCCGUCGCUCucaCUCCa -5'
13943 3' -58.4 NC_003521.1 + 38137 0.67 0.843618
Target:  5'- aCUGCAGCUUuacCGGCGuGGGUG-GGUu -3'
miRNA:   3'- -GACGUCGAGcc-GUCGCuCUCACuCCA- -5'
13943 3' -58.4 NC_003521.1 + 186398 0.67 0.843618
Target:  5'- -aGCAGCggCGGCAGC---AGUGcAGGUa -3'
miRNA:   3'- gaCGUCGa-GCCGUCGcucUCAC-UCCA- -5'
13943 3' -58.4 NC_003521.1 + 191626 0.67 0.843618
Target:  5'- uUGCuguGCgCGGCgaagcgAGCGAGAGcuUGGGGUg -3'
miRNA:   3'- gACGu--CGaGCCG------UCGCUCUC--ACUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.