miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13945 5' -59.3 NC_003521.1 + 203329 0.66 0.891565
Target:  5'- cGCGGgCCCGaAAACGccGGGGGGcAGAc -3'
miRNA:   3'- cUGCCgGGGCcUUUGC--CUCCCCuUCU- -5'
13945 5' -59.3 NC_003521.1 + 34547 0.66 0.891565
Target:  5'- cACGGCCCUGGGcgaAAUcGAGGGacccGAGGGc -3'
miRNA:   3'- cUGCCGGGGCCU---UUGcCUCCC----CUUCU- -5'
13945 5' -59.3 NC_003521.1 + 113360 0.66 0.891565
Target:  5'- gGACGGgC-CGGggGC-GAGGaGGAGGGu -3'
miRNA:   3'- -CUGCCgGgGCCuuUGcCUCC-CCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 140705 0.66 0.885132
Target:  5'- gGACGGCa-CGGAGGCcGGGGaGAAGAc -3'
miRNA:   3'- -CUGCCGggGCCUUUGcCUCCcCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 33043 0.66 0.885132
Target:  5'- cGCGGgUCUcucgccgugaGGAAGCGGGaGGGAAGAg -3'
miRNA:   3'- cUGCCgGGG----------CCUUUGCCUcCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 92635 0.66 0.885132
Target:  5'- cGACGGCagCGGGcgAGCGGAcGGGcAGGAc -3'
miRNA:   3'- -CUGCCGggGCCU--UUGCCUcCCC-UUCU- -5'
13945 5' -59.3 NC_003521.1 + 173395 0.66 0.885132
Target:  5'- aGCGGCUCCGcAAACaccacccguGGAGGGGGc-- -3'
miRNA:   3'- cUGCCGGGGCcUUUG---------CCUCCCCUucu -5'
13945 5' -59.3 NC_003521.1 + 224337 0.66 0.878501
Target:  5'- cGCGcGCCcgCCGGAGGacgaGGAGGGugacGAAGAg -3'
miRNA:   3'- cUGC-CGG--GGCCUUUg---CCUCCC----CUUCU- -5'
13945 5' -59.3 NC_003521.1 + 179616 0.66 0.878501
Target:  5'- uACGGUUUCGGGAA---AGGGGAGGAc -3'
miRNA:   3'- cUGCCGGGGCCUUUgccUCCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 105812 0.66 0.878501
Target:  5'- cACGGUgCCCGGcagccAGAUGGuGGGGcGGAu -3'
miRNA:   3'- cUGCCG-GGGCC-----UUUGCCuCCCCuUCU- -5'
13945 5' -59.3 NC_003521.1 + 70957 0.66 0.878501
Target:  5'- aGCGGCUCCGGAcggagccacgccGACGGAGau-GAGAa -3'
miRNA:   3'- cUGCCGGGGCCU------------UUGCCUCcccUUCU- -5'
13945 5' -59.3 NC_003521.1 + 47534 0.66 0.878501
Target:  5'- aGCGuGUCCCGGAGGucguccauguCGaGcGGGGAAGAc -3'
miRNA:   3'- cUGC-CGGGGCCUUU----------GC-CuCCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 119357 0.66 0.871673
Target:  5'- cGGCGaGCUgCCGuuGGAAgGcGAGGGGAAGAa -3'
miRNA:   3'- -CUGC-CGG-GGC--CUUUgC-CUCCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 111187 0.66 0.871673
Target:  5'- cGACGGCgCCGcGGACGGuGGGcuGGGc -3'
miRNA:   3'- -CUGCCGgGGCcUUUGCCuCCCcuUCU- -5'
13945 5' -59.3 NC_003521.1 + 200746 0.66 0.864653
Target:  5'- --gGGUCCCGGGG--GGuGGGGggGu -3'
miRNA:   3'- cugCCGGGGCCUUugCCuCCCCuuCu -5'
13945 5' -59.3 NC_003521.1 + 77307 0.66 0.864653
Target:  5'- uGugGGCCaugauGAUGGAGGGGuAGAg -3'
miRNA:   3'- -CugCCGGggccuUUGCCUCCCCuUCU- -5'
13945 5' -59.3 NC_003521.1 + 240569 0.66 0.864653
Target:  5'- --gGGUCCCGGGG--GGuGGGGggGu -3'
miRNA:   3'- cugCCGGGGCCUUugCCuCCCCuuCu -5'
13945 5' -59.3 NC_003521.1 + 20 0.66 0.864653
Target:  5'- --gGGUCCCGGGG--GGuGGGGggGu -3'
miRNA:   3'- cugCCGGGGCCUUugCCuCCCCuuCu -5'
13945 5' -59.3 NC_003521.1 + 217053 0.66 0.864653
Target:  5'- cGCGGCuCCUGGcgugaucACGGGaGGGggGAa -3'
miRNA:   3'- cUGCCG-GGGCCuu-----UGCCUcCCCuuCU- -5'
13945 5' -59.3 NC_003521.1 + 173346 0.66 0.857447
Target:  5'- uGACGGaCCUcuCGGGAA-GGAGgacGGGAGGAg -3'
miRNA:   3'- -CUGCC-GGG--GCCUUUgCCUC---CCCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.