miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13945 5' -59.3 NC_003521.1 + 59814 0.68 0.767524
Target:  5'- cGCGGCgCCGGAcGCGGgaaAGGGGu--- -3'
miRNA:   3'- cUGCCGgGGCCUuUGCC---UCCCCuucu -5'
13945 5' -59.3 NC_003521.1 + 190200 0.68 0.764845
Target:  5'- cGGCGGCCCgcaCGauGAugauaaaucgcgguGGCGGAGGuGGAGGAc -3'
miRNA:   3'- -CUGCCGGG---GC--CU--------------UUGCCUCC-CCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 117880 0.68 0.758558
Target:  5'- uACGGCgCCGGGuagGACGGGGGcGGcGGu -3'
miRNA:   3'- cUGCCGgGGCCU---UUGCCUCC-CCuUCu -5'
13945 5' -59.3 NC_003521.1 + 39537 0.69 0.749491
Target:  5'- uGACGGUgaCCCGGAGuuCGGAcugguuaacGGaGGAAGAc -3'
miRNA:   3'- -CUGCCG--GGGCCUUu-GCCU---------CC-CCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 148646 0.69 0.749491
Target:  5'- aACGGCCCCGagcuCGGcGGGGAuGGc -3'
miRNA:   3'- cUGCCGGGGCcuuuGCCuCCCCUuCU- -5'
13945 5' -59.3 NC_003521.1 + 157290 0.69 0.740333
Target:  5'- cGGCGGCCgCGu--ACGG-GGGGAGGc -3'
miRNA:   3'- -CUGCCGGgGCcuuUGCCuCCCCUUCu -5'
13945 5' -59.3 NC_003521.1 + 87345 0.69 0.740333
Target:  5'- aGACGGCCcgagCCGGAGcccgaggaggagGCcGAGGuGGAGGAc -3'
miRNA:   3'- -CUGCCGG----GGCCUU------------UGcCUCC-CCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 75970 0.69 0.740333
Target:  5'- cGGCGGCUgUGGu-GCGGAcGGGGGcuGGAc -3'
miRNA:   3'- -CUGCCGGgGCCuuUGCCU-CCCCU--UCU- -5'
13945 5' -59.3 NC_003521.1 + 50457 0.69 0.731091
Target:  5'- gGGCGGa-CCGGAca-GGAGGcGGAGGAg -3'
miRNA:   3'- -CUGCCggGGCCUuugCCUCC-CCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 5643 0.69 0.721772
Target:  5'- aACGGaCCCacauGGcgGCGGAGGGuGggGGg -3'
miRNA:   3'- cUGCC-GGGg---CCuuUGCCUCCC-CuuCU- -5'
13945 5' -59.3 NC_003521.1 + 142863 0.69 0.712384
Target:  5'- aGCGGCgUgGGAGGCGGGGaGGcGggGGc -3'
miRNA:   3'- cUGCCGgGgCCUUUGCCUC-CC-CuuCU- -5'
13945 5' -59.3 NC_003521.1 + 98976 0.7 0.693434
Target:  5'- cGGCGGCgCCUuuaGGAGGCGucAGGGGAGGu -3'
miRNA:   3'- -CUGCCG-GGG---CCUUUGCc-UCCCCUUCu -5'
13945 5' -59.3 NC_003521.1 + 223485 0.7 0.693434
Target:  5'- cACGGCCCgGGAggUGGGGcGGAu-- -3'
miRNA:   3'- cUGCCGGGgCCUuuGCCUCcCCUucu -5'
13945 5' -59.3 NC_003521.1 + 131098 0.7 0.692481
Target:  5'- --gGGCUCCGGAcGGCGGGGcggcgcggcugccGGGAAGGg -3'
miRNA:   3'- cugCCGGGGCCU-UUGCCUC-------------CCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 75332 0.7 0.683887
Target:  5'- cAUGGCgUCGGAGGCGGuGGGcAGGAu -3'
miRNA:   3'- cUGCCGgGGCCUUUGCCuCCCcUUCU- -5'
13945 5' -59.3 NC_003521.1 + 150217 0.7 0.683887
Target:  5'- cACGGCCgaGGggGacggGGAGGGGGAcGAc -3'
miRNA:   3'- cUGCCGGggCCuuUg---CCUCCCCUU-CU- -5'
13945 5' -59.3 NC_003521.1 + 62027 0.7 0.664684
Target:  5'- cGGCGGUCCCGGuGACGGGGaacGGcuGAa -3'
miRNA:   3'- -CUGCCGGGGCCuUUGCCUCc--CCuuCU- -5'
13945 5' -59.3 NC_003521.1 + 13836 0.7 0.655045
Target:  5'- gGAaaGCaCCUGGAAugugacgacCGGAGGGGAGGAu -3'
miRNA:   3'- -CUgcCG-GGGCCUUu--------GCCUCCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 91089 0.7 0.655045
Target:  5'- uGGgGGugccucccauCCCCGGGGAaGGGGGGGggGGc -3'
miRNA:   3'- -CUgCC----------GGGGCCUUUgCCUCCCCuuCU- -5'
13945 5' -59.3 NC_003521.1 + 196566 0.7 0.655045
Target:  5'- aGGCGGCgcaggggaaUCGGAAcACGG-GGGGAGGAa -3'
miRNA:   3'- -CUGCCGg--------GGCCUU-UGCCuCCCCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.