miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 3' -59.6 NC_003521.1 + 69442 0.68 0.711122
Target:  5'- uGUCUaGCGCgCCGcGGcGGGCGUCGGg -3'
miRNA:   3'- -UAGA-CGCGgGGUaUUaCCCGCGGCCg -5'
13948 3' -59.6 NC_003521.1 + 3704 0.68 0.70152
Target:  5'- -cCUGUGCCCUc-----GGCGUCGGCa -3'
miRNA:   3'- uaGACGCGGGGuauuacCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 113336 0.72 0.498592
Target:  5'- cGUCUGCGCCUCGUAGcccggaaGGUGCUGGa -3'
miRNA:   3'- -UAGACGCGGGGUAUUac-----CCGCGGCCg -5'
13948 3' -59.6 NC_003521.1 + 218727 0.75 0.362644
Target:  5'- -aCUGCGCCCaCGgcGU-GGUGCCGGCc -3'
miRNA:   3'- uaGACGCGGG-GUauUAcCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 77863 0.67 0.793789
Target:  5'- ---cGCGCCCgGUGacGUGGGUucgGCCacGGCg -3'
miRNA:   3'- uagaCGCGGGgUAU--UACCCG---CGG--CCG- -5'
13948 3' -59.6 NC_003521.1 + 74377 0.67 0.758045
Target:  5'- -aCgGCGCCC----AUGGGCGUCGcGCa -3'
miRNA:   3'- uaGaCGCGGGguauUACCCGCGGC-CG- -5'
13948 3' -59.6 NC_003521.1 + 103576 0.69 0.692832
Target:  5'- cGUCaGCGCCUgcuggaguaccggcgCGUGGUGgccuacgacgagacGGCGCCGGCc -3'
miRNA:   3'- -UAGaCGCGGG---------------GUAUUAC--------------CCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 153366 0.75 0.355039
Target:  5'- cGUCgcgcGCGCCCggcggCGUGGUGGGCcCCGGCc -3'
miRNA:   3'- -UAGa---CGCGGG-----GUAUUACCCGcGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 27792 0.68 0.739526
Target:  5'- cGUCUaCGCCaCC---GUGGGCGCCucgGGCc -3'
miRNA:   3'- -UAGAcGCGG-GGuauUACCCGCGG---CCG- -5'
13948 3' -59.6 NC_003521.1 + 144500 0.86 0.076409
Target:  5'- gAUCUGCGCgCCCAUGAUGagcaggcaGGCGUCGGCg -3'
miRNA:   3'- -UAGACGCG-GGGUAUUAC--------CCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 106137 0.68 0.70152
Target:  5'- cAUCUGCGCCCUgAUcGUGGGCacgcGCCa-- -3'
miRNA:   3'- -UAGACGCGGGG-UAuUACCCG----CGGccg -5'
13948 3' -59.6 NC_003521.1 + 128929 0.68 0.720663
Target:  5'- cUCUcGgGCCUCAUcagcaaggagacGGUGucGGCGCCGGCc -3'
miRNA:   3'- uAGA-CgCGGGGUA------------UUAC--CCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 218001 0.69 0.662652
Target:  5'- uGUCUGCGUCCguggccggGcgGGGgGCCGGg -3'
miRNA:   3'- -UAGACGCGGGgua-----UuaCCCgCGGCCg -5'
13948 3' -59.6 NC_003521.1 + 73961 0.71 0.536108
Target:  5'- -gCUGCGCUCCAcgaagcucuUGAgcagcgccuUGGGCGCCucgGGCg -3'
miRNA:   3'- uaGACGCGGGGU---------AUU---------ACCCGCGG---CCG- -5'
13948 3' -59.6 NC_003521.1 + 191285 0.74 0.402334
Target:  5'- -gCUGcCGCCCgaAUGGcUGGGCGCCGuGCa -3'
miRNA:   3'- uaGAC-GCGGGg-UAUU-ACCCGCGGC-CG- -5'
13948 3' -59.6 NC_003521.1 + 123434 0.75 0.362644
Target:  5'- -aCUGCGCCgCGaGAcGGuGCGCCGGCc -3'
miRNA:   3'- uaGACGCGGgGUaUUaCC-CGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 103065 0.67 0.802409
Target:  5'- -gCUGcCGCCCgAgcugGcGGcCGCCGGCg -3'
miRNA:   3'- uaGAC-GCGGGgUauuaC-CC-GCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 227210 0.67 0.802409
Target:  5'- ---gGCGCCgCCAUGGauuucgccgggGGGC-CCGGCg -3'
miRNA:   3'- uagaCGCGG-GGUAUUa----------CCCGcGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 152883 0.67 0.785035
Target:  5'- -cCUGCGCCgCC-UGGUgaccaaccaGGGCGCCGa- -3'
miRNA:   3'- uaGACGCGG-GGuAUUA---------CCCGCGGCcg -5'
13948 3' -59.6 NC_003521.1 + 196862 0.67 0.766249
Target:  5'- cGUCUGCGuaCCCCGcuGUuggcgagcaggucGGGCGUCGGg -3'
miRNA:   3'- -UAGACGC--GGGGUauUA-------------CCCGCGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.