miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 3' -59.6 NC_003521.1 + 17064 1.1 0.001702
Target:  5'- gAUCUGCGCCCCAUAAUGGGCGCCGGCa -3'
miRNA:   3'- -UAGACGCGGGGUAUUACCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 103576 0.69 0.692832
Target:  5'- cGUCaGCGCCUgcuggaguaccggcgCGUGGUGgccuacgacgagacGGCGCCGGCc -3'
miRNA:   3'- -UAGaCGCGGG---------------GUAUUAC--------------CCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 3704 0.68 0.70152
Target:  5'- -cCUGUGCCCUc-----GGCGUCGGCa -3'
miRNA:   3'- uaGACGCGGGGuauuacCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 24664 0.66 0.8509
Target:  5'- uUCUaUGCUCCGcGGgcccGGCGCCGGCu -3'
miRNA:   3'- uAGAcGCGGGGUaUUac--CCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 123434 0.75 0.362644
Target:  5'- -aCUGCGCCgCGaGAcGGuGCGCCGGCc -3'
miRNA:   3'- uaGACGCGGgGUaUUaCC-CGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 43247 0.75 0.370361
Target:  5'- cGUCUGCagGUCgUCG--GUGGGCGCCGGCg -3'
miRNA:   3'- -UAGACG--CGG-GGUauUACCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 191285 0.74 0.402334
Target:  5'- -gCUGcCGCCCgaAUGGcUGGGCGCCGuGCa -3'
miRNA:   3'- uaGAC-GCGGGg-UAUU-ACCCGCGGC-CG- -5'
13948 3' -59.6 NC_003521.1 + 149558 0.73 0.453436
Target:  5'- cGUCgucGCGCUCCAgcacguacuuGUGGGCGCCGacGCg -3'
miRNA:   3'- -UAGa--CGCGGGGUau--------UACCCGCGGC--CG- -5'
13948 3' -59.6 NC_003521.1 + 73961 0.71 0.536108
Target:  5'- -gCUGCGCUCCAcgaagcucuUGAgcagcgccuUGGGCGCCucgGGCg -3'
miRNA:   3'- uaGACGCGGGGU---------AUU---------ACCCGCGG---CCG- -5'
13948 3' -59.6 NC_003521.1 + 85754 0.69 0.691864
Target:  5'- ---cGgGUCCCGgcggGGGCGCgGGCa -3'
miRNA:   3'- uagaCgCGGGGUauuaCCCGCGgCCG- -5'
13948 3' -59.6 NC_003521.1 + 222178 0.7 0.613609
Target:  5'- ---gGCaGCCCCGaagGGUGGcgccgcGCGCCGGCa -3'
miRNA:   3'- uagaCG-CGGGGUa--UUACC------CGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 113336 0.72 0.498592
Target:  5'- cGUCUGCGCCUCGUAGcccggaaGGUGCUGGa -3'
miRNA:   3'- -UAGACGCGGGGUAUUac-----CCGCGGCCg -5'
13948 3' -59.6 NC_003521.1 + 144500 0.86 0.076409
Target:  5'- gAUCUGCGCgCCCAUGAUGagcaggcaGGCGUCGGCg -3'
miRNA:   3'- -UAGACGCG-GGGUAUUAC--------CCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 218001 0.69 0.662652
Target:  5'- uGUCUGCGUCCguggccggGcgGGGgGCCGGg -3'
miRNA:   3'- -UAGACGCGGGgua-----UuaCCCgCGGCCg -5'
13948 3' -59.6 NC_003521.1 + 153366 0.75 0.355039
Target:  5'- cGUCgcgcGCGCCCggcggCGUGGUGGGCcCCGGCc -3'
miRNA:   3'- -UAGa---CGCGGG-----GUAUUACCCGcGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 76483 0.72 0.471241
Target:  5'- --gUGCGCgCCCAg---GGcGUGCCGGCg -3'
miRNA:   3'- uagACGCG-GGGUauuaCC-CGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 3676 0.69 0.682162
Target:  5'- gGUCUGagugGCCCCAUccccgGAUGccGGCGUCGGg -3'
miRNA:   3'- -UAGACg---CGGGGUA-----UUAC--CCGCGGCCg -5'
13948 3' -59.6 NC_003521.1 + 106137 0.68 0.70152
Target:  5'- cAUCUGCGCCCUgAUcGUGGGCacgcGCCa-- -3'
miRNA:   3'- -UAGACGCGGGG-UAuUACCCG----CGGccg -5'
13948 3' -59.6 NC_003521.1 + 218727 0.75 0.362644
Target:  5'- -aCUGCGCCCaCGgcGU-GGUGCCGGCc -3'
miRNA:   3'- uaGACGCGGG-GUauUAcCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 238627 0.74 0.386129
Target:  5'- ---cGCGCCCCGcuAUGgguacgcgacGGCGCCGGCc -3'
miRNA:   3'- uagaCGCGGGGUauUAC----------CCGCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.