miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 3' -55.4 NC_003521.1 + 88739 0.66 0.97423
Target:  5'- cAGAGCC-GG-CGCACGucgccGUGGUCCu -3'
miRNA:   3'- cUUUCGGuCCaGCGUGCu----CGCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 165783 0.66 0.972663
Target:  5'- cGAAGGCCAGcccgcuggcgcugccGUCGCAguAGgGGUCCu -3'
miRNA:   3'- -CUUUCGGUC---------------CAGCGUgcUCgCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 92595 0.66 0.959028
Target:  5'- cGGGAGCgAGG-CGgGCGGauGgGAUCCGg -3'
miRNA:   3'- -CUUUCGgUCCaGCgUGCU--CgCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 148414 0.66 0.971581
Target:  5'- aGGGAGCCAuGGUgcgggcggcCGCGCcGGCGGcUCCa -3'
miRNA:   3'- -CUUUCGGU-CCA---------GCGUGcUCGCU-AGGc -5'
13950 3' -55.4 NC_003521.1 + 133379 0.66 0.971581
Target:  5'- ---cGCCGGcacaGCGCG-GCGGUCCGc -3'
miRNA:   3'- cuuuCGGUCcag-CGUGCuCGCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 103065 0.66 0.971581
Target:  5'- -cAGGgCGGGU-GCGCGGGCGAgggCUGc -3'
miRNA:   3'- cuUUCgGUCCAgCGUGCUCGCUa--GGC- -5'
13950 3' -55.4 NC_003521.1 + 27384 0.66 0.971581
Target:  5'- gGggGGCCAGG-C-CACGGG-GAUCuCGu -3'
miRNA:   3'- -CuuUCGGUCCaGcGUGCUCgCUAG-GC- -5'
13950 3' -55.4 NC_003521.1 + 4672 0.67 0.938576
Target:  5'- cGAAAGCCgggaggaggAGGUC-CACGAGCGGg--- -3'
miRNA:   3'- -CUUUCGG---------UCCAGcGUGCUCGCUaggc -5'
13950 3' -55.4 NC_003521.1 + 55937 0.67 0.955374
Target:  5'- uGAAGcCCAGG-CGCAUGAGCa--CCGu -3'
miRNA:   3'- cUUUC-GGUCCaGCGUGCUCGcuaGGC- -5'
13950 3' -55.4 NC_003521.1 + 32233 0.67 0.955374
Target:  5'- aGAcGGCCAGGUCcCAcuCGAGCGucaggccCCGg -3'
miRNA:   3'- -CUuUCGGUCCAGcGU--GCUCGCua-----GGC- -5'
13950 3' -55.4 NC_003521.1 + 137492 0.67 0.943108
Target:  5'- --cGGCC-GGU-GCGCGGGgGAUCUGa -3'
miRNA:   3'- cuuUCGGuCCAgCGUGCUCgCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 55363 0.67 0.955374
Target:  5'- ---cGCCGGGugcggaggugaUCGC-CGAGCGGgugcgCCGg -3'
miRNA:   3'- cuuuCGGUCC-----------AGCGuGCUCGCUa----GGC- -5'
13950 3' -55.4 NC_003521.1 + 191096 0.67 0.943108
Target:  5'- aGGGAGCCGGGUCGUccaGCGAG-GAc--- -3'
miRNA:   3'- -CUUUCGGUCCAGCG---UGCUCgCUaggc -5'
13950 3' -55.4 NC_003521.1 + 201583 0.67 0.940416
Target:  5'- --uGGCCaccagcacgauccagGGGUCGCGCG-GCGAgagCUGg -3'
miRNA:   3'- cuuUCGG---------------UCCAGCGUGCuCGCUa--GGC- -5'
13950 3' -55.4 NC_003521.1 + 239732 0.67 0.940416
Target:  5'- --uGGCCaccagcacgauccagGGGUCGCGCG-GCGAgagCUGg -3'
miRNA:   3'- cuuUCGG---------------UCCAGCGUGCuCGCUa--GGC- -5'
13950 3' -55.4 NC_003521.1 + 47385 0.67 0.943108
Target:  5'- cGAAGGgucCCAGGgcgcUGCGCGAGCGGagCUGg -3'
miRNA:   3'- -CUUUC---GGUCCa---GCGUGCUCGCUa-GGC- -5'
13950 3' -55.4 NC_003521.1 + 218374 0.67 0.944858
Target:  5'- -uGAGCCAGGcgugccgcgugaaGCGCGGGCGGUacUCGg -3'
miRNA:   3'- cuUUCGGUCCag-----------CGUGCUCGCUA--GGC- -5'
13950 3' -55.4 NC_003521.1 + 77680 0.67 0.947417
Target:  5'- -cAGGCCGGGggGCACGcuGGCGAagacagCCGu -3'
miRNA:   3'- cuUUCGGUCCagCGUGC--UCGCUa-----GGC- -5'
13950 3' -55.4 NC_003521.1 + 101911 0.67 0.951504
Target:  5'- -uAGGgCAGG-CGCAcCGAGCGG-CCGu -3'
miRNA:   3'- cuUUCgGUCCaGCGU-GCUCGCUaGGC- -5'
13950 3' -55.4 NC_003521.1 + 64521 0.67 0.951504
Target:  5'- cAAGGCCAuGUUGCGCGA-CGAcgCCGa -3'
miRNA:   3'- cUUUCGGUcCAGCGUGCUcGCUa-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.