miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 3' -55.4 NC_003521.1 + 50225 0.7 0.827936
Target:  5'- cGAAGGUCAGGUCGCG-GGGCcacUCCu -3'
miRNA:   3'- -CUUUCGGUCCAGCGUgCUCGcu-AGGc -5'
13950 3' -55.4 NC_003521.1 + 53461 0.68 0.912521
Target:  5'- --cGGCCAGGgCGUccuccaGCGAGCGcUCCu -3'
miRNA:   3'- cuuUCGGUCCaGCG------UGCUCGCuAGGc -5'
13950 3' -55.4 NC_003521.1 + 55363 0.67 0.955374
Target:  5'- ---cGCCGGGugcggaggugaUCGC-CGAGCGGgugcgCCGg -3'
miRNA:   3'- cuuuCGGUCC-----------AGCGuGCUCGCUa----GGC- -5'
13950 3' -55.4 NC_003521.1 + 55937 0.67 0.955374
Target:  5'- uGAAGcCCAGG-CGCAUGAGCa--CCGu -3'
miRNA:   3'- cUUUC-GGUCCaGCGUGCUCGcuaGGC- -5'
13950 3' -55.4 NC_003521.1 + 64521 0.67 0.951504
Target:  5'- cAAGGCCAuGUUGCGCGA-CGAcgCCGa -3'
miRNA:   3'- cUUUCGGUcCAGCGUGCUcGCUa-GGC- -5'
13950 3' -55.4 NC_003521.1 + 65282 0.7 0.851767
Target:  5'- -cGGGCCAGGaUGCGCGugcuaggggcGCGGUCCa -3'
miRNA:   3'- cuUUCGGUCCaGCGUGCu---------CGCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 66814 0.66 0.962471
Target:  5'- ---cGCCAGGUCggugaaGCGCGucuugaggucGGCGAUCUu -3'
miRNA:   3'- cuuuCGGUCCAG------CGUGC----------UCGCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 67356 0.66 0.959028
Target:  5'- uAGGGCUugAGGUCGUAgCGcGUGAUCUGg -3'
miRNA:   3'- cUUUCGG--UCCAGCGU-GCuCGCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 70300 0.66 0.968743
Target:  5'- aGAAAGCggugCAGGUCGCccagcaGCGAGgCGGUgacgCCGu -3'
miRNA:   3'- -CUUUCG----GUCCAGCG------UGCUC-GCUA----GGC- -5'
13950 3' -55.4 NC_003521.1 + 73425 0.72 0.757516
Target:  5'- ---cGCCAGGUCGCAggcCGAgGCGGcgCCGc -3'
miRNA:   3'- cuuuCGGUCCAGCGU---GCU-CGCUa-GGC- -5'
13950 3' -55.4 NC_003521.1 + 73566 0.66 0.97423
Target:  5'- cGAGcAGCCAGGUCuGCuCG-GCG-UCCu -3'
miRNA:   3'- -CUU-UCGGUCCAG-CGuGCuCGCuAGGc -5'
13950 3' -55.4 NC_003521.1 + 77680 0.67 0.947417
Target:  5'- -cAGGCCGGGggGCACGcuGGCGAagacagCCGu -3'
miRNA:   3'- cuUUCGGUCCagCGUGC--UCGCUa-----GGC- -5'
13950 3' -55.4 NC_003521.1 + 77882 0.66 0.971581
Target:  5'- --cGGCCGGcGcCGuCACGGGCGcgCCc -3'
miRNA:   3'- cuuUCGGUC-CaGC-GUGCUCGCuaGGc -5'
13950 3' -55.4 NC_003521.1 + 84874 0.69 0.876714
Target:  5'- aGAAGGCCgcccgguccGGGUgGCGCGAGUaggccgucagcgcccGGUCCa -3'
miRNA:   3'- -CUUUCGG---------UCCAgCGUGCUCG---------------CUAGGc -5'
13950 3' -55.4 NC_003521.1 + 88739 0.66 0.97423
Target:  5'- cAGAGCC-GG-CGCACGucgccGUGGUCCu -3'
miRNA:   3'- cUUUCGGuCCaGCGUGCu----CGCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 90134 0.67 0.938576
Target:  5'- ---cGCCAGGuggcgUCGUAUGGGCGAcaugCCa -3'
miRNA:   3'- cuuuCGGUCC-----AGCGUGCUCGCUa---GGc -5'
13950 3' -55.4 NC_003521.1 + 92082 0.7 0.859341
Target:  5'- cGggGGUCGGGgggUGCGCaGGGCGGUgccCCGg -3'
miRNA:   3'- -CuuUCGGUCCa--GCGUG-CUCGCUA---GGC- -5'
13950 3' -55.4 NC_003521.1 + 92445 0.72 0.775918
Target:  5'- gGGAGGCCAGGgcaUCGCcccgaccccCGGGCGAgCCGg -3'
miRNA:   3'- -CUUUCGGUCC---AGCGu--------GCUCGCUaGGC- -5'
13950 3' -55.4 NC_003521.1 + 92595 0.66 0.959028
Target:  5'- cGGGAGCgAGG-CGgGCGGauGgGAUCCGg -3'
miRNA:   3'- -CUUUCGgUCCaGCgUGCU--CgCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 100496 0.66 0.962471
Target:  5'- ---cGCCAGGUgGCaccGCGGGCG-UCgGa -3'
miRNA:   3'- cuuuCGGUCCAgCG---UGCUCGCuAGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.