miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 3' -55.4 NC_003521.1 + 4672 0.67 0.938576
Target:  5'- cGAAAGCCgggaggaggAGGUC-CACGAGCGGg--- -3'
miRNA:   3'- -CUUUCGG---------UCCAGcGUGCUCGCUaggc -5'
13950 3' -55.4 NC_003521.1 + 5829 0.67 0.956861
Target:  5'- ---uGCCGGGUCccgGCGAccggggcccuuuuauGCGAUCCGg -3'
miRNA:   3'- cuuuCGGUCCAGcg-UGCU---------------CGCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 6174 0.73 0.690244
Target:  5'- cGGGGCCAGG-CGCagaACGAGaCGAUCUGc -3'
miRNA:   3'- cUUUCGGUCCaGCG---UGCUC-GCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 16934 0.66 0.971581
Target:  5'- -cGGGCCAGGUCaGgAgGAGCGGUg-- -3'
miRNA:   3'- cuUUCGGUCCAG-CgUgCUCGCUAggc -5'
13950 3' -55.4 NC_003521.1 + 17414 0.69 0.887637
Target:  5'- --uGGCCagggaGGGUCGgGCGAaGCGcgCCGg -3'
miRNA:   3'- cuuUCGG-----UCCAGCgUGCU-CGCuaGGC- -5'
13950 3' -55.4 NC_003521.1 + 19169 0.66 0.969901
Target:  5'- -cGGGCCAGG-CGUGCGAGgGGaagaugcacgacacgUCCa -3'
miRNA:   3'- cuUUCGGUCCaGCGUGCUCgCU---------------AGGc -5'
13950 3' -55.4 NC_003521.1 + 19475 1.09 0.005761
Target:  5'- cGAAAGCCAGGUCGCACGAGCGAUCCGu -3'
miRNA:   3'- -CUUUCGGUCCAGCGUGCUCGCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 20962 0.74 0.660556
Target:  5'- ---cGCCAGGUUG-GCGGGCGGUUCGc -3'
miRNA:   3'- cuuuCGGUCCAGCgUGCUCGCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 24187 0.69 0.873191
Target:  5'- cGAAGCCGGG-CgGCAUGGGCGGaacgucgUCCa -3'
miRNA:   3'- cUUUCGGUCCaG-CGUGCUCGCU-------AGGc -5'
13950 3' -55.4 NC_003521.1 + 27121 0.66 0.97423
Target:  5'- gGAGAGCUucGGuUCGCGCGucauCGGUCUGg -3'
miRNA:   3'- -CUUUCGGu-CC-AGCGUGCuc--GCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 27384 0.66 0.971581
Target:  5'- gGggGGCCAGG-C-CACGGG-GAUCuCGu -3'
miRNA:   3'- -CuuUCGGUCCaGcGUGCUCgCUAG-GC- -5'
13950 3' -55.4 NC_003521.1 + 27476 0.68 0.918185
Target:  5'- --uGGCCAGGUcCGuCAUGuGGCGGUCgGa -3'
miRNA:   3'- cuuUCGGUCCA-GC-GUGC-UCGCUAGgC- -5'
13950 3' -55.4 NC_003521.1 + 29319 0.85 0.169357
Target:  5'- gGAAGGCCAGGUCGUugaGCGuGUGGUCCGu -3'
miRNA:   3'- -CUUUCGGUCCAGCG---UGCuCGCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 32233 0.67 0.955374
Target:  5'- aGAcGGCCAGGUCcCAcuCGAGCGucaggccCCGg -3'
miRNA:   3'- -CUuUCGGUCCAGcGU--GCUCGCua-----GGC- -5'
13950 3' -55.4 NC_003521.1 + 34142 0.67 0.93811
Target:  5'- cAGGGCCAGGcccacgCGCACGAaggccuugaggucGCGggCCa -3'
miRNA:   3'- cUUUCGGUCCa-----GCGUGCU-------------CGCuaGGc -5'
13950 3' -55.4 NC_003521.1 + 35210 0.66 0.959028
Target:  5'- aGggGGCgcgCGGGUCGgAuCGAGCG-UCCu -3'
miRNA:   3'- -CuuUCG---GUCCAGCgU-GCUCGCuAGGc -5'
13950 3' -55.4 NC_003521.1 + 35666 0.67 0.947417
Target:  5'- aGAAGGCCuucuGUCGCGCGGcccGCG-UCCu -3'
miRNA:   3'- -CUUUCGGuc--CAGCGUGCU---CGCuAGGc -5'
13950 3' -55.4 NC_003521.1 + 41046 0.7 0.844004
Target:  5'- cGGGAGuCCGGaGUCGC-CGAGCu-UCCGg -3'
miRNA:   3'- -CUUUC-GGUC-CAGCGuGCUCGcuAGGC- -5'
13950 3' -55.4 NC_003521.1 + 44831 0.68 0.933818
Target:  5'- aGAAAGUaCAGGUCGUugaGGGCG-UCCu -3'
miRNA:   3'- -CUUUCG-GUCCAGCGug-CUCGCuAGGc -5'
13950 3' -55.4 NC_003521.1 + 47385 0.67 0.943108
Target:  5'- cGAAGGgucCCAGGgcgcUGCGCGAGCGGagCUGg -3'
miRNA:   3'- -CUUUC---GGUCCa---GCGUGCUCGCUa-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.