miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 3' -55.4 NC_003521.1 + 240033 0.7 0.844004
Target:  5'- --cGGCgGGG-CGC-CGGGCGGUCCu -3'
miRNA:   3'- cuuUCGgUCCaGCGuGCUCGCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 239732 0.67 0.940416
Target:  5'- --uGGCCaccagcacgauccagGGGUCGCGCG-GCGAgagCUGg -3'
miRNA:   3'- cuuUCGG---------------UCCAGCGUGCuCGCUa--GGC- -5'
13950 3' -55.4 NC_003521.1 + 224423 0.77 0.475641
Target:  5'- --cGGCCAGG-CGCugcgugguggGCGAGCGGUCCa -3'
miRNA:   3'- cuuUCGGUCCaGCG----------UGCUCGCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 219453 0.66 0.971306
Target:  5'- --cAGCUcGGUCagcugcgGCACGAGCGA-CCa -3'
miRNA:   3'- cuuUCGGuCCAG-------CGUGCUCGCUaGGc -5'
13950 3' -55.4 NC_003521.1 + 218374 0.67 0.944858
Target:  5'- -uGAGCCAGGcgugccgcgugaaGCGCGGGCGGUacUCGg -3'
miRNA:   3'- cuUUCGGUCCag-----------CGUGCUCGCUA--GGC- -5'
13950 3' -55.4 NC_003521.1 + 215841 0.66 0.971581
Target:  5'- -cGAGCCcGGUUG-ACGGcGCGGUCCc -3'
miRNA:   3'- cuUUCGGuCCAGCgUGCU-CGCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 201583 0.67 0.940416
Target:  5'- --uGGCCaccagcacgauccagGGGUCGCGCG-GCGAgagCUGg -3'
miRNA:   3'- cuuUCGG---------------UCCAGCGUGCuCGCUa--GGC- -5'
13950 3' -55.4 NC_003521.1 + 201282 0.7 0.844004
Target:  5'- --cGGCgGGG-CGC-CGGGCGGUCCu -3'
miRNA:   3'- cuuUCGgUCCaGCGuGCUCGCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 195648 0.71 0.802585
Target:  5'- cGAGGCCAGGgagUCGCaccaccacuuacGCGuGCGGUCCc -3'
miRNA:   3'- cUUUCGGUCC---AGCG------------UGCuCGCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 192482 0.66 0.971581
Target:  5'- ---cGCCGGGUCGCAagaaacAG-GGUCCGc -3'
miRNA:   3'- cuuuCGGUCCAGCGUgc----UCgCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 191096 0.67 0.943108
Target:  5'- aGGGAGCCGGGUCGUccaGCGAG-GAc--- -3'
miRNA:   3'- -CUUUCGGUCCAGCG---UGCUCgCUaggc -5'
13950 3' -55.4 NC_003521.1 + 187492 0.66 0.962471
Target:  5'- --cGGCguGGUgGuCACGA-CGAUCCGa -3'
miRNA:   3'- cuuUCGguCCAgC-GUGCUcGCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 179821 0.68 0.928834
Target:  5'- uGGGGCCAGuGUCGCAgggaggaagcCGAGCGGgaCGa -3'
miRNA:   3'- cUUUCGGUC-CAGCGU----------GCUCGCUagGC- -5'
13950 3' -55.4 NC_003521.1 + 166870 0.66 0.968743
Target:  5'- -cGGGCgCAGGUCGUacaucaaguccGCGGGCGcgCgGg -3'
miRNA:   3'- cuUUCG-GUCCAGCG-----------UGCUCGCuaGgC- -5'
13950 3' -55.4 NC_003521.1 + 165783 0.66 0.972663
Target:  5'- cGAAGGCCAGcccgcuggcgcugccGUCGCAguAGgGGUCCu -3'
miRNA:   3'- -CUUUCGGUC---------------CAGCGUgcUCgCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 164751 0.68 0.906632
Target:  5'- gGggGGCaucgcGGUCGC-CGGGCGAaCCa -3'
miRNA:   3'- -CuuUCGgu---CCAGCGuGCUCGCUaGGc -5'
13950 3' -55.4 NC_003521.1 + 156777 0.67 0.955374
Target:  5'- -cGAGCgugUAGGUCuGCACGGGCGAgaCGu -3'
miRNA:   3'- cuUUCG---GUCCAG-CGUGCUCGCUagGC- -5'
13950 3' -55.4 NC_003521.1 + 156729 0.67 0.947417
Target:  5'- aGGAGCC-GGUC-UGCGAGCuGAUCUGa -3'
miRNA:   3'- cUUUCGGuCCAGcGUGCUCG-CUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 155506 0.67 0.951504
Target:  5'- uGGAA-CUGGGgggcCGCACGaAGCGGUCCa -3'
miRNA:   3'- -CUUUcGGUCCa---GCGUGC-UCGCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 148414 0.66 0.971581
Target:  5'- aGGGAGCCAuGGUgcgggcggcCGCGCcGGCGGcUCCa -3'
miRNA:   3'- -CUUUCGGU-CCA---------GCGUGcUCGCU-AGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.