miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 3' -55.4 NC_003521.1 + 101273 0.67 0.956861
Target:  5'- ---cGCCAGGacgCGCcccuguccucccucaGCGAGCGAgaacgCCGu -3'
miRNA:   3'- cuuuCGGUCCa--GCG---------------UGCUCGCUa----GGC- -5'
13950 3' -55.4 NC_003521.1 + 101366 0.66 0.962471
Target:  5'- cGAAAGucCCGGGU-GCGCGAGCcGUCgCGc -3'
miRNA:   3'- -CUUUC--GGUCCAgCGUGCUCGcUAG-GC- -5'
13950 3' -55.4 NC_003521.1 + 101745 0.66 0.965708
Target:  5'- gGAAGGCCggcAGGUCGUGCG-GCGGa--- -3'
miRNA:   3'- -CUUUCGG---UCCAGCGUGCuCGCUaggc -5'
13950 3' -55.4 NC_003521.1 + 101911 0.67 0.951504
Target:  5'- -uAGGgCAGG-CGCAcCGAGCGG-CCGu -3'
miRNA:   3'- cuUUCgGUCCaGCGU-GCUCGCUaGGC- -5'
13950 3' -55.4 NC_003521.1 + 103065 0.66 0.971581
Target:  5'- -cAGGgCGGGU-GCGCGGGCGAgggCUGc -3'
miRNA:   3'- cuUUCgGUCCAgCGUGCUCGCUa--GGC- -5'
13950 3' -55.4 NC_003521.1 + 103445 0.72 0.766774
Target:  5'- ---cGCCAGGUCGCGgCGGuuGCGcgCCa -3'
miRNA:   3'- cuuuCGGUCCAGCGU-GCU--CGCuaGGc -5'
13950 3' -55.4 NC_003521.1 + 105321 0.7 0.851767
Target:  5'- gGAucGCCccuGGGgcugcucgCGCACGGGCGggCCGu -3'
miRNA:   3'- -CUuuCGG---UCCa-------GCGUGCUCGCuaGGC- -5'
13950 3' -55.4 NC_003521.1 + 106560 0.74 0.669492
Target:  5'- -uGGGCC-GGUCGCgagagcacgaucuGCGAGuCGAUCCGg -3'
miRNA:   3'- cuUUCGGuCCAGCG-------------UGCUC-GCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 109490 0.69 0.894187
Target:  5'- ---cGCCAGG-CGCuccaGCGAGUGGUCgCGc -3'
miRNA:   3'- cuuuCGGUCCaGCG----UGCUCGCUAG-GC- -5'
13950 3' -55.4 NC_003521.1 + 115376 0.66 0.96146
Target:  5'- --uGGCCAGGgccggcaugugcaggGCGCGGGCGG-CCGc -3'
miRNA:   3'- cuuUCGGUCCag-------------CGUGCUCGCUaGGC- -5'
13950 3' -55.4 NC_003521.1 + 115773 0.69 0.90052
Target:  5'- aGAAGGCCGGuGUgacggCGCACGAaGCGcgucagcaGUCCGc -3'
miRNA:   3'- -CUUUCGGUC-CA-----GCGUGCU-CGC--------UAGGC- -5'
13950 3' -55.4 NC_003521.1 + 119051 0.66 0.968743
Target:  5'- ---cGUCGGGgUGCugGAGCGcUCCu -3'
miRNA:   3'- cuuuCGGUCCaGCGugCUCGCuAGGc -5'
13950 3' -55.4 NC_003521.1 + 123293 0.69 0.8739
Target:  5'- ---cGUCAGGUC-CGCGGGCGAcUCGg -3'
miRNA:   3'- cuuuCGGUCCAGcGUGCUCGCUaGGC- -5'
13950 3' -55.4 NC_003521.1 + 128368 0.71 0.793832
Target:  5'- aGAAGGUCAGGUC-CACGuuGCGcUCCa -3'
miRNA:   3'- -CUUUCGGUCCAGcGUGCu-CGCuAGGc -5'
13950 3' -55.4 NC_003521.1 + 129727 0.68 0.912521
Target:  5'- --cGGCCc-GUCGaCGCGAGCGcGUCCGc -3'
miRNA:   3'- cuuUCGGucCAGC-GUGCUCGC-UAGGC- -5'
13950 3' -55.4 NC_003521.1 + 133379 0.66 0.971581
Target:  5'- ---cGCCGGcacaGCGCG-GCGGUCCGc -3'
miRNA:   3'- cuuuCGGUCcag-CGUGCuCGCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 136916 0.68 0.906632
Target:  5'- --cGGCgCGGGUCGCACG-GCGuUgCGg -3'
miRNA:   3'- cuuUCG-GUCCAGCGUGCuCGCuAgGC- -5'
13950 3' -55.4 NC_003521.1 + 137492 0.67 0.943108
Target:  5'- --cGGCC-GGU-GCGCGGGgGAUCUGa -3'
miRNA:   3'- cuuUCGGuCCAgCGUGCUCgCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 137538 0.66 0.959028
Target:  5'- ----uCCAGGUCGCugGGGCcc-CCGc -3'
miRNA:   3'- cuuucGGUCCAGCGugCUCGcuaGGC- -5'
13950 3' -55.4 NC_003521.1 + 138702 0.68 0.916509
Target:  5'- -uGAGCCuGGgcgGCACGGGCGcuggcugguggugcGUCCGg -3'
miRNA:   3'- cuUUCGGuCCag-CGUGCUCGC--------------UAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.