Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13950 | 3' | -55.4 | NC_003521.1 | + | 34142 | 0.67 | 0.93811 |
Target: 5'- cAGGGCCAGGcccacgCGCACGAaggccuugaggucGCGggCCa -3' miRNA: 3'- cUUUCGGUCCa-----GCGUGCU-------------CGCuaGGc -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 145282 | 0.67 | 0.938576 |
Target: 5'- --cGGCCAGcUCGCGCGccGGCGucucgCCGg -3' miRNA: 3'- cuuUCGGUCcAGCGUGC--UCGCua---GGC- -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 239732 | 0.67 | 0.940416 |
Target: 5'- --uGGCCaccagcacgauccagGGGUCGCGCG-GCGAgagCUGg -3' miRNA: 3'- cuuUCGG---------------UCCAGCGUGCuCGCUa--GGC- -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 218374 | 0.67 | 0.944858 |
Target: 5'- -uGAGCCAGGcgugccgcgugaaGCGCGGGCGGUacUCGg -3' miRNA: 3'- cuUUCGGUCCag-----------CGUGCUCGCUA--GGC- -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 77680 | 0.67 | 0.947417 |
Target: 5'- -cAGGCCGGGggGCACGcuGGCGAagacagCCGu -3' miRNA: 3'- cuUUCGGUCCagCGUGC--UCGCUa-----GGC- -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 101911 | 0.67 | 0.951504 |
Target: 5'- -uAGGgCAGG-CGCAcCGAGCGG-CCGu -3' miRNA: 3'- cuUUCgGUCCaGCGU-GCUCGCUaGGC- -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 64521 | 0.67 | 0.951504 |
Target: 5'- cAAGGCCAuGUUGCGCGA-CGAcgCCGa -3' miRNA: 3'- cUUUCGGUcCAGCGUGCUcGCUa-GGC- -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 32233 | 0.67 | 0.955374 |
Target: 5'- aGAcGGCCAGGUCcCAcuCGAGCGucaggccCCGg -3' miRNA: 3'- -CUuUCGGUCCAGcGU--GCUCGCua-----GGC- -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 55937 | 0.67 | 0.955374 |
Target: 5'- uGAAGcCCAGG-CGCAUGAGCa--CCGu -3' miRNA: 3'- cUUUC-GGUCCaGCGUGCUCGcuaGGC- -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 101273 | 0.67 | 0.956861 |
Target: 5'- ---cGCCAGGacgCGCcccuguccucccucaGCGAGCGAgaacgCCGu -3' miRNA: 3'- cuuuCGGUCCa--GCG---------------UGCUCGCUa----GGC- -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 136916 | 0.68 | 0.906632 |
Target: 5'- --cGGCgCGGGUCGCACG-GCGuUgCGg -3' miRNA: 3'- cuuUCG-GUCCAGCGUGCuCGCuAgGC- -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 179821 | 0.68 | 0.928834 |
Target: 5'- uGGGGCCAGuGUCGCAgggaggaagcCGAGCGGgaCGa -3' miRNA: 3'- cUUUCGGUC-CAGCGU----------GCUCGCUagGC- -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 27476 | 0.68 | 0.918185 |
Target: 5'- --uGGCCAGGUcCGuCAUGuGGCGGUCgGa -3' miRNA: 3'- cuuUCGGUCCA-GC-GUGC-UCGCUAGgC- -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 138702 | 0.68 | 0.916509 |
Target: 5'- -uGAGCCuGGgcgGCACGGGCGcuggcugguggugcGUCCGg -3' miRNA: 3'- cuUUCGGuCCag-CGUGCUCGC--------------UAGGC- -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 129727 | 0.68 | 0.912521 |
Target: 5'- --cGGCCc-GUCGaCGCGAGCGcGUCCGc -3' miRNA: 3'- cuuUCGGucCAGC-GUGCUCGC-UAGGC- -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 44831 | 0.68 | 0.933818 |
Target: 5'- aGAAAGUaCAGGUCGUugaGGGCG-UCCu -3' miRNA: 3'- -CUUUCG-GUCCAGCGug-CUCGCuAGGc -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 53461 | 0.68 | 0.912521 |
Target: 5'- --cGGCCAGGgCGUccuccaGCGAGCGcUCCu -3' miRNA: 3'- cuuUCGGUCCaGCG------UGCUCGCuAGGc -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 164751 | 0.68 | 0.906632 |
Target: 5'- gGggGGCaucgcGGUCGC-CGGGCGAaCCa -3' miRNA: 3'- -CuuUCGgu---CCAGCGuGCUCGCUaGGc -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 144226 | 0.69 | 0.880874 |
Target: 5'- gGAAGGCCGGGUgguaGCACucGCGcagCCGg -3' miRNA: 3'- -CUUUCGGUCCAg---CGUGcuCGCua-GGC- -5' |
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13950 | 3' | -55.4 | NC_003521.1 | + | 17414 | 0.69 | 0.887637 |
Target: 5'- --uGGCCagggaGGGUCGgGCGAaGCGcgCCGg -3' miRNA: 3'- cuuUCGG-----UCCAGCgUGCU-CGCuaGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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