miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 3' -55.4 NC_003521.1 + 145282 0.67 0.938576
Target:  5'- --cGGCCAGcUCGCGCGccGGCGucucgCCGg -3'
miRNA:   3'- cuuUCGGUCcAGCGUGC--UCGCua---GGC- -5'
13950 3' -55.4 NC_003521.1 + 5829 0.67 0.956861
Target:  5'- ---uGCCGGGUCccgGCGAccggggcccuuuuauGCGAUCCGg -3'
miRNA:   3'- cuuuCGGUCCAGcg-UGCU---------------CGCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 34142 0.67 0.93811
Target:  5'- cAGGGCCAGGcccacgCGCACGAaggccuugaggucGCGggCCa -3'
miRNA:   3'- cUUUCGGUCCa-----GCGUGCU-------------CGCuaGGc -5'
13950 3' -55.4 NC_003521.1 + 90134 0.67 0.938576
Target:  5'- ---cGCCAGGuggcgUCGUAUGGGCGAcaugCCa -3'
miRNA:   3'- cuuuCGGUCC-----AGCGUGCUCGCUa---GGc -5'
13950 3' -55.4 NC_003521.1 + 32233 0.67 0.955374
Target:  5'- aGAcGGCCAGGUCcCAcuCGAGCGucaggccCCGg -3'
miRNA:   3'- -CUuUCGGUCCAGcGU--GCUCGCua-----GGC- -5'
13950 3' -55.4 NC_003521.1 + 101911 0.67 0.951504
Target:  5'- -uAGGgCAGG-CGCAcCGAGCGG-CCGu -3'
miRNA:   3'- cuUUCgGUCCaGCGU-GCUCGCUaGGC- -5'
13950 3' -55.4 NC_003521.1 + 64521 0.67 0.951504
Target:  5'- cAAGGCCAuGUUGCGCGA-CGAcgCCGa -3'
miRNA:   3'- cUUUCGGUcCAGCGUGCUcGCUa-GGC- -5'
13950 3' -55.4 NC_003521.1 + 4672 0.67 0.938576
Target:  5'- cGAAAGCCgggaggaggAGGUC-CACGAGCGGg--- -3'
miRNA:   3'- -CUUUCGG---------UCCAGcGUGCUCGCUaggc -5'
13950 3' -55.4 NC_003521.1 + 137492 0.67 0.943108
Target:  5'- --cGGCC-GGU-GCGCGGGgGAUCUGa -3'
miRNA:   3'- cuuUCGGuCCAgCGUGCUCgCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 156729 0.67 0.947417
Target:  5'- aGGAGCC-GGUC-UGCGAGCuGAUCUGa -3'
miRNA:   3'- cUUUCGGuCCAGcGUGCUCG-CUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 35666 0.67 0.947417
Target:  5'- aGAAGGCCuucuGUCGCGCGGcccGCG-UCCu -3'
miRNA:   3'- -CUUUCGGuc--CAGCGUGCU---CGCuAGGc -5'
13950 3' -55.4 NC_003521.1 + 155506 0.67 0.951504
Target:  5'- uGGAA-CUGGGgggcCGCACGaAGCGGUCCa -3'
miRNA:   3'- -CUUUcGGUCCa---GCGUGC-UCGCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 142855 0.67 0.951504
Target:  5'- gGGAGGCgGGGagGCGgGGGCGG-CCa -3'
miRNA:   3'- -CUUUCGgUCCagCGUgCUCGCUaGGc -5'
13950 3' -55.4 NC_003521.1 + 156777 0.67 0.955374
Target:  5'- -cGAGCgugUAGGUCuGCACGGGCGAgaCGu -3'
miRNA:   3'- cuUUCG---GUCCAG-CGUGCUCGCUagGC- -5'
13950 3' -55.4 NC_003521.1 + 55363 0.67 0.955374
Target:  5'- ---cGCCGGGugcggaggugaUCGC-CGAGCGGgugcgCCGg -3'
miRNA:   3'- cuuuCGGUCC-----------AGCGuGCUCGCUa----GGC- -5'
13950 3' -55.4 NC_003521.1 + 101273 0.67 0.956861
Target:  5'- ---cGCCAGGacgCGCcccuguccucccucaGCGAGCGAgaacgCCGu -3'
miRNA:   3'- cuuuCGGUCCa--GCG---------------UGCUCGCUa----GGC- -5'
13950 3' -55.4 NC_003521.1 + 201583 0.67 0.940416
Target:  5'- --uGGCCaccagcacgauccagGGGUCGCGCG-GCGAgagCUGg -3'
miRNA:   3'- cuuUCGG---------------UCCAGCGUGCuCGCUa--GGC- -5'
13950 3' -55.4 NC_003521.1 + 55937 0.67 0.955374
Target:  5'- uGAAGcCCAGG-CGCAUGAGCa--CCGu -3'
miRNA:   3'- cUUUC-GGUCCaGCGUGCUCGcuaGGC- -5'
13950 3' -55.4 NC_003521.1 + 165783 0.66 0.972663
Target:  5'- cGAAGGCCAGcccgcuggcgcugccGUCGCAguAGgGGUCCu -3'
miRNA:   3'- -CUUUCGGUC---------------CAGCGUgcUCgCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 27121 0.66 0.97423
Target:  5'- gGAGAGCUucGGuUCGCGCGucauCGGUCUGg -3'
miRNA:   3'- -CUUUCGGu-CC-AGCGUGCuc--GCUAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.