miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 3' -55.4 NC_003521.1 + 138702 0.68 0.916509
Target:  5'- -uGAGCCuGGgcgGCACGGGCGcuggcugguggugcGUCCGg -3'
miRNA:   3'- cuUUCGGuCCag-CGUGCUCGC--------------UAGGC- -5'
13950 3' -55.4 NC_003521.1 + 129727 0.68 0.912521
Target:  5'- --cGGCCc-GUCGaCGCGAGCGcGUCCGc -3'
miRNA:   3'- cuuUCGGucCAGC-GUGCUCGC-UAGGC- -5'
13950 3' -55.4 NC_003521.1 + 53461 0.68 0.912521
Target:  5'- --cGGCCAGGgCGUccuccaGCGAGCGcUCCu -3'
miRNA:   3'- cuuUCGGUCCaGCG------UGCUCGCuAGGc -5'
13950 3' -55.4 NC_003521.1 + 164751 0.68 0.906632
Target:  5'- gGggGGCaucgcGGUCGC-CGGGCGAaCCa -3'
miRNA:   3'- -CuuUCGgu---CCAGCGuGCUCGCUaGGc -5'
13950 3' -55.4 NC_003521.1 + 115773 0.69 0.90052
Target:  5'- aGAAGGCCGGuGUgacggCGCACGAaGCGcgucagcaGUCCGc -3'
miRNA:   3'- -CUUUCGGUC-CA-----GCGUGCU-CGC--------UAGGC- -5'
13950 3' -55.4 NC_003521.1 + 109490 0.69 0.894187
Target:  5'- ---cGCCAGG-CGCuccaGCGAGUGGUCgCGc -3'
miRNA:   3'- cuuuCGGUCCaGCG----UGCUCGCUAG-GC- -5'
13950 3' -55.4 NC_003521.1 + 84874 0.69 0.876714
Target:  5'- aGAAGGCCgcccgguccGGGUgGCGCGAGUaggccgucagcgcccGGUCCa -3'
miRNA:   3'- -CUUUCGG---------UCCAgCGUGCUCG---------------CUAGGc -5'
13950 3' -55.4 NC_003521.1 + 105321 0.7 0.851767
Target:  5'- gGAucGCCccuGGGgcugcucgCGCACGGGCGggCCGu -3'
miRNA:   3'- -CUuuCGG---UCCa-------GCGUGCUCGCuaGGC- -5'
13950 3' -55.4 NC_003521.1 + 65282 0.7 0.851767
Target:  5'- -cGGGCCAGGaUGCGCGugcuaggggcGCGGUCCa -3'
miRNA:   3'- cuUUCGGUCCaGCGUGCu---------CGCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 144226 0.69 0.880874
Target:  5'- gGAAGGCCGGGUgguaGCACucGCGcagCCGg -3'
miRNA:   3'- -CUUUCGGUCCAg---CGUGcuCGCua-GGC- -5'
13950 3' -55.4 NC_003521.1 + 17414 0.69 0.887637
Target:  5'- --uGGCCagggaGGGUCGgGCGAaGCGcgCCGg -3'
miRNA:   3'- cuuUCGG-----UCCAGCgUGCU-CGCuaGGC- -5'
13950 3' -55.4 NC_003521.1 + 136916 0.68 0.906632
Target:  5'- --cGGCgCGGGUCGCACG-GCGuUgCGg -3'
miRNA:   3'- cuuUCG-GUCCAGCGUGCuCGCuAgGC- -5'
13950 3' -55.4 NC_003521.1 + 41046 0.7 0.844004
Target:  5'- cGGGAGuCCGGaGUCGC-CGAGCu-UCCGg -3'
miRNA:   3'- -CUUUC-GGUC-CAGCGuGCUCGcuAGGC- -5'
13950 3' -55.4 NC_003521.1 + 201282 0.7 0.844004
Target:  5'- --cGGCgGGG-CGC-CGGGCGGUCCu -3'
miRNA:   3'- cuuUCGgUCCaGCGuGCUCGCUAGGc -5'
13950 3' -55.4 NC_003521.1 + 92445 0.72 0.775918
Target:  5'- gGGAGGCCAGGgcaUCGCcccgaccccCGGGCGAgCCGg -3'
miRNA:   3'- -CUUUCGGUCC---AGCGu--------GCUCGCUaGGC- -5'
13950 3' -55.4 NC_003521.1 + 73425 0.72 0.757516
Target:  5'- ---cGCCAGGUCGCAggcCGAgGCGGcgCCGc -3'
miRNA:   3'- cuuuCGGUCCAGCGU---GCU-CGCUa-GGC- -5'
13950 3' -55.4 NC_003521.1 + 142132 0.72 0.757516
Target:  5'- uGAGGGCCuGGUgGCugGugaGGCGGUgCCGg -3'
miRNA:   3'- -CUUUCGGuCCAgCGugC---UCGCUA-GGC- -5'
13950 3' -55.4 NC_003521.1 + 20962 0.74 0.660556
Target:  5'- ---cGCCAGGUUG-GCGGGCGGUUCGc -3'
miRNA:   3'- cuuuCGGUCCAGCgUGCUCGCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 29319 0.85 0.169357
Target:  5'- gGAAGGCCAGGUCGUugaGCGuGUGGUCCGu -3'
miRNA:   3'- -CUUUCGGUCCAGCG---UGCuCGCUAGGC- -5'
13950 3' -55.4 NC_003521.1 + 27121 0.66 0.97423
Target:  5'- gGAGAGCUucGGuUCGCGCGucauCGGUCUGg -3'
miRNA:   3'- -CUUUCGGu-CC-AGCGUGCuc--GCUAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.